Výsledky vyhledávání - "Ende, Arie Van der"

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Additional file 8 of Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Autor: Longbottom, David, Livingstone, Morag, Ribeca, Paolo, Beeckman, Delphine Sylvie Anne, Ende, Arie Van Der, Pannekoek, Yvonne, Vanrompay, Daisy

Additional file 8: Fig. S6. Summary of Gubbins recombination analysis including avian C. abortus strains 15-59d/3 and 15-70d/24. The red blocks represent recombination events occurring on an internal branch of the phylogenetic tree, which are shared

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Additional file 7 of Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Autor: Longbottom, David, Livingstone, Morag, Ribeca, Paolo, Beeckman, Delphine Sylvie Anne, Ende, Arie Van Der, Pannekoek, Yvonne, Vanrompay, Daisy

Additional file 7: Fig. S5. Whole genome NeighborNet network analysis. Phylogenetic network of a whole genome sequence alignment of the C. abortus (Cab) and C. psittaci (Cps) strains shown in Table 2, using the NeighborNet distances transformation (O

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Additional file 2 of Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Autor: Longbottom, David, Livingstone, Morag, Ribeca, Paolo, Beeckman, Delphine Sylvie Anne, Ende, Arie Van Der, Pannekoek, Yvonne, Vanrompay, Daisy

Additional file 2: Fig. S1. Minimum spanning tree illustrating cluster analysis of MLST sequence type (ST) profiles. Cluster analysis is based on nucleotide differences in seven MLST housekeeping gene fragments (enoA, fumC, gatA, gidA, hemN, hlfX and

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Additional file 9 of Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Autor: Longbottom, David, Livingstone, Morag, Ribeca, Paolo, Beeckman, Delphine Sylvie Anne, Ende, Arie Van Der, Pannekoek, Yvonne, Vanrompay, Daisy

Additional file 9: Fig. S7. Comparative genome analysis of C. psittaci 84/2334. Whole genome comparisons of C. psittaci strain 84/2334 and (A) C. abortus strains S26/3, AB7 and LLG and (B) representative C. psittaci strains VS225, 84/55, GR9 and M56

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Additional file 11 of Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Autor: Longbottom, David, Livingstone, Morag, Ribeca, Paolo, Beeckman, Delphine Sylvie Anne, Ende, Arie Van Der, Pannekoek, Yvonne, Vanrompay, Daisy

Additional file 11: Fig. S9. Polymorphic membrane protein family phylogenies. Consensus trees for singleton PmpA, PmpB, PmpD and PmpH family members (A), for the PmpE family members (B) and PmpG family members (C) for strain 84/2334 and the C. abortu

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Additional file 6 of Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Autor: Longbottom, David, Livingstone, Morag, Ribeca, Paolo, Beeckman, Delphine Sylvie Anne, Ende, Arie Van Der, Pannekoek, Yvonne, Vanrompay, Daisy

Additional file 6: Fig. S4. Whole genome phylogenetic analysis. Phylogenetic tree of a whole genome sequence MAFFT alignment of the C. abortus (Cab) and C. psittaci (Cps) strains shown in Table 2, and C. buteonis strain RSHA. The consensus tree was e

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Additional file 5 of Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Autor: Longbottom, David, Livingstone, Morag, Ribeca, Paolo, Beeckman, Delphine Sylvie Anne, Ende, Arie Van Der, Pannekoek, Yvonne, Vanrompay, Daisy

Additional file 5: Fig. S3. Whole genome phylogenetic analysis informed by recombination with added outgroup. Phylogenetic tree of a whole genome sequence MAFFT alignment of the C. abortus (Cab) and C. psittaci (Cps) strains shown in Table 2 as deriv

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