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pro vyhledávání: '"Emrich Scott J"'
A core task in precision agriculture is the identification of climatic and ecological conditions that are advantageous for a given crop. The most succinct approach is geolocation, which is concerned with locating the native region of a given sample b
Externí odkaz:
http://arxiv.org/abs/2301.13387
Autor:
Newaz, Khalique, Piland, Jacob, Clark, Patricia L., Emrich, Scott J., Li, Jun, Milenkovic, Tijana
Protein structural classification (PSC) is a supervised problem of assigning proteins into pre-defined structural (e.g., CATH or SCOPe) classes based on the proteins' sequence or 3D structural features. We recently proposed PSC approaches that model
Externí odkaz:
http://arxiv.org/abs/2105.07079
Autor:
Tan John C, Collins Brendan, Desany Brian A, Tan Asako, Regier Allison, Samarakoon Upeka, Emrich Scott J, Ferdig Michael T
Publikováno v:
BMC Genomics, Vol 12, Iss 1, p 116 (2011)
Abstract Background Knowledge of the origins, distribution, and inheritance of variation in the malaria parasite (Plasmodium falciparum) genome is crucial for understanding its evolution; however the 81% (A+T) genome poses challenges to high-throughp
Externí odkaz:
https://doaj.org/article/15b8a3cebc6249de81c3a5b4e332b8d8
Publikováno v:
BMC Bioinformatics, Vol 11, Iss 1, p 526 (2010)
Abstract Background Complexity and noise in expression quantitative trait loci (eQTL) studies make it difficult to distinguish potential regulatory relationships among the many interactions. The predominant method of identifying eQTLs finds associati
Externí odkaz:
https://doaj.org/article/2419c6d2dcee42dbb7178d7acbce5cfa
Autor:
Costantini Carlo, Traore Sekou F, Emrich Scott J, Sharakhova Maria V, Bretz David A, Reidenbach Kyanne R, Regier Allison A, Sangaré Djibril M, Lobo Neil F, Besansky Nora J, Collins Frank H
Publikováno v:
Malaria Journal, Vol 9, Iss 1, p 293 (2010)
Abstract Background Alternative arrangements of chromosome 2 inversions in Anopheles gambiae are important sources of population structure, and are associated with adaptation to environmental heterogeneity. The forces responsible for their origin and
Externí odkaz:
https://doaj.org/article/9ebcb789af9a4e9eb4673daebbc20488
Autor:
Emrich Scott J, Lobo Neil F, Carmichael Rory D, Dzurisin Jason DK, O'Neil Shawn T, Hellmann Jessica J
Publikováno v:
BMC Genomics, Vol 11, Iss 1, p 310 (2010)
Abstract Background Several recent studies have demonstrated the use of Roche 454 sequencing technology for de novo transcriptome analysis. Low error rates and high coverage also allow for effective SNP discovery and genetic diversity estimates. Howe
Externí odkaz:
https://doaj.org/article/816bb1cc7df844b5bd06b7b33323f433
Akademický článek
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Autor:
Rodriguez, Anabel, Diehl, Jacob D., Wright, Gabriel S., Bonar, Christopher D., Lundgren, Taylor J., Moss, McKenze J., Jun Li, Milenkovic, Tijana, Huber, Paul W., Champion, Matthew M., Emrich, Scott J., Clark, Patricia L.
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America; 9/3/2024, Vol. 121 Issue 36, p1-10, 39p
Network approach integrates 3D structural and sequence data to improve protein structural comparison
Autor:
Faisal, Fazle E., Chaney, Julie L., Newaz, Khalique, Li, Jun, Emrich, Scott J., Clark, Patricia L., Milenkovic, Tijana
Initial protein structural comparisons were sequence-based. Since amino acids that are distant in the sequence can be close in the 3-dimensional (3D) structure, 3D contact approaches can complement sequence approaches. Traditional 3D contact approach
Externí odkaz:
http://arxiv.org/abs/1605.07247
Restriction site Associated DNA (RAD) tagging (also known as RAD-seq, etc.) is an emerging method for analyzing an organism's genome without completely sequencing it. This can be applied to a non-model organism without a reference genome, though this
Externí odkaz:
http://arxiv.org/abs/1511.06754