Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Emmanuel Perrodou"'
Ortho-proteogenomics: Multiple proteomes investigation through orthology and a new MS-based protocol
Autor:
Christine Carapito, Christine Schaeffer, Jean-Marc Reyrat, Alain Van Dorsselaer, Emmanuel Perrodou, Caroline Deshayes, Sebastien Gallien, Odile Lecompte, Olivier Poch
Publikováno v:
Genome Research
Genome Research, Cold Spring Harbor Laboratory Press, 2009, 19 (1), pp.128-35. ⟨10.1101/gr.081901.108⟩
Genome Research, 2009, 19 (1), pp.128-35. ⟨10.1101/gr.081901.108⟩
Genome Research, Cold Spring Harbor Laboratory Press, 2009, 19 (1), pp.128-35. 〈10.1101/gr.081901.108〉
Genome Research, Cold Spring Harbor Laboratory Press, 2009, 19 (1), pp.128-35. ⟨10.1101/gr.081901.108⟩
Genome Research, 2009, 19 (1), pp.128-35. ⟨10.1101/gr.081901.108⟩
Genome Research, Cold Spring Harbor Laboratory Press, 2009, 19 (1), pp.128-35. 〈10.1101/gr.081901.108〉
The progress in sequencing technologies irrigates biology with an ever-increasing number of genome sequences. In most cases, the gene repertoire is predicted in silico and conceptually translated into proteins. As recently highlighted, the predicted
Autor:
Olivier Poch, Caroline Deshayes, Raymond Ripp, Odile Lecompte, Emmanuel Perrodou, Alain Van Dorsselaer, Jean Muller, Christine Schaeffer, Jean-Marc Reyrat
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2006, 34 (Database issue), pp.D338-43. ⟨10.1093/nar/gkj060⟩
Nucleic Acids Research, Oxford University Press, 2006, 34 (Database issue), pp.D338-43. ⟨10.1093/nar/gkj060⟩
International audience; Unrecognized frameshifts, in-frame stop codons and sequencing errors lead to Interrupted CoDing Sequence (ICDS) that can seriously affect all subsequent steps of functional characterization, from in silico analysis to high-thr
Autor:
Charles A. Janeway, Marie Lagueux, Marie Meister, Jules A. Hoffmann, Emmanuel Perrodou, Daniel Doucet, Daniel Zachary, Anne-Isabelle Munier
Publikováno v:
EMBO reports. 3:1195-1200
Blood cells play a crucial role in both morphogenetic and immunological processes in Drosophila, yet the factors regulating their proliferation remain largely unknown. In order to address this question, we raised antibodies against a tumorous blood c
Publikováno v:
Proceedings of the National Academy of Sciences. 97:11427-11432
We show thatDrosophilaexpresses four genes encoding proteins with significant similarities with the thiolester-containing proteins of the complement C3/α2-macroglobulin superfamily. The genes are transcribed at a low level during all stages of devel
Autor:
Dario Benelli, Diem Tran, Emmanuel Perrodou, Lucia Guzzini, Eric J. Mathur, Jun Sun, Odile Lecompte, Beatrice Cobucci-Ponzano, Jing Wei, Mosè Rossi, Marco Moracci, Paola Londei
Publikováno v:
J Proteome Res
J Proteome Res, 2010, 9 (5), pp.2496-2507. ⟨10.1021/pr901166q⟩
Journal of proteome research
9 (2010): 2496–2507. doi:10.1021/pr901166q
info:cnr-pdr/source/autori:Cobucci-Ponzano B.; Guzzini L.; Benelli D.; Londei P.; Perrodou E.; Lecompte O.; Tran D.; Sun J.; Wei J.; Mathur E.J.; Rossi M.; Moracci M./titolo:Functional characterization and high-throughput proteomic analysis of interrupted genes in the archaeon Sulfolobus solfataricus/doi:10.1021%2Fpr901166q/rivista:Journal of proteome research (Print)/anno:2010/pagina_da:2496/pagina_a:2507/intervallo_pagine:2496–2507/volume:9
J Proteome Res, 2010, 9 (5), pp.2496-2507. ⟨10.1021/pr901166q⟩
Journal of proteome research
9 (2010): 2496–2507. doi:10.1021/pr901166q
info:cnr-pdr/source/autori:Cobucci-Ponzano B.; Guzzini L.; Benelli D.; Londei P.; Perrodou E.; Lecompte O.; Tran D.; Sun J.; Wei J.; Mathur E.J.; Rossi M.; Moracci M./titolo:Functional characterization and high-throughput proteomic analysis of interrupted genes in the archaeon Sulfolobus solfataricus/doi:10.1021%2Fpr901166q/rivista:Journal of proteome research (Print)/anno:2010/pagina_da:2496/pagina_a:2507/intervallo_pagine:2496–2507/volume:9
Sequenced genomes often reveal interrupted coding sequences that complicate the annotation process and the subsequent functional characterization of the genes. In the past, interrupted genes were generally considered to be the result of sequencing er
Autor:
Isabelle Boutet, Franck Zal, Patrick Wincker, Didier Jollivet, Jean Weissenbach, Didier Busso, Arnaud Tanguy, Emmanuelle Leize-Wagner, Dominique Higuet, Odile Lecompte, Yann Brelivet, Bruce Shillito, Olivier Poch, Stéphane Hourdez, Bernard Knoops, Dino Moras, Corinne Da Silva, François H. Lallier, Béatrice Segurens, Jean-François Rees, Emmanuel Perrodou, Françoise Gaill, Jean Yves Mary, Nicolas Gagnière, Jean-Claude Thierry
Publikováno v:
BMC Genomics
BMC Genomics, 2010, 11 (1), pp.634. ⟨10.1186/1471-2164-11-634⟩
BMC Genomics, Vol. 11, no. 634 (2010)
BMC Genomics, BioMed Central, 2010, 11 (1), pp.634. ⟨10.1186/1471-2164-11-634⟩
BMC Genomics, Vol 11, Iss 1, p 634 (2010)
BMC Genomics, 2010, 11 (1), pp.634. ⟨10.1186/1471-2164-11-634⟩
BMC Genomics, Vol. 11, no. 634 (2010)
BMC Genomics, BioMed Central, 2010, 11 (1), pp.634. ⟨10.1186/1471-2164-11-634⟩
BMC Genomics, Vol 11, Iss 1, p 634 (2010)
Background Alvinella pompejana is a representative of Annelids, a key phylum for evo-devo studies that is still poorly studied at the sequence level. A. pompejana inhabits deep-sea hydrothermal vents and is currently known as one of the most thermoto
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6a1489179671590a8d9f64e85a2d7e55
https://www.hal.inserm.fr/inserm-00617220
https://www.hal.inserm.fr/inserm-00617220
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, BioMed Central, 2008, 9, pp.213. ⟨10.1186/1471-2105-9-213⟩
BMC Bioinformatics, Vol 9, Iss 1, p 213 (2008)
BMC Bioinformatics, BioMed Central, 2008, 9, pp.213. ⟨10.1186/1471-2105-9-213⟩
BMC Bioinformatics, Vol 9, Iss 1, p 213 (2008)
Background Linear motifs (LMs) are abundant short regulatory sites used for modulating the functions of many eukaryotic proteins. They play important roles in post-translational modification, cell compartment targeting, docking sites for regulatory c
Autor:
Caroline Deshayes, Emmanuel Perrodou, Jean Marc Reyrat, Odile Lecompte, Alain Van-Dorsselaer, Olivier Poch, Daniel Euphrasie, Christine Schaeffer, Sebastien Gallien
Publikováno v:
Genome Biology. 8:R20
Background: In silico analysis has shown that all bacterial genomes contain a low percentage of ORFs with undetected frameshifts and in-frame stop codons. These interrupted coding sequences (ICDSs) may really be present in the organism or may result
Autor:
Beatrice Cobucci-Ponzano, Lucia Guzzini, Dario Benelli, Paola Londei, Emmanuel Perrodou, Odile Lecompte, Diem Tran, Jun Sun, Jing Wei, Eric J. Mathur, MoseÌ Rossi, Marco Moracci
Publikováno v:
Journal of Proteome Research; May2010, Vol. 9 Issue 5, p2496-2507, 12p
Autor:
Caroline Deshayes, Odile Lecompte, Eric Frapy, Olivier Poch, Jean Marc Reyrat, Pablo Bifani, Daniel Euphrasie, Emmanuel Perrodou
Publikováno v:
BMC Evolutionary Biology
BMC Evolutionary Biology, BioMed Central, 2008, 8, pp.78. ⟨10.1186/1471-2148-8-78⟩
BMC Evolutionary Biology, BioMed Central, 2008, 8, pp.78. 〈10.1186/1471-2148-8-78〉
BMC Evolutionary Biology, Vol 8, Iss 1, p 78 (2008)
BMC Evolutionary Biology, BioMed Central, 2008, 8, pp.78. ⟨10.1186/1471-2148-8-78⟩
BMC Evolutionary Biology, BioMed Central, 2008, 8, pp.78. 〈10.1186/1471-2148-8-78〉
BMC Evolutionary Biology, Vol 8, Iss 1, p 78 (2008)
BackgroundComputer-assisted analyses have shown that all bacterial genomes contain a small percentage of open reading frames with a frameshift or in-frame stop codon We report here a comparative analysis of these interrupted coding sequences (ICDSs)