Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Emmanuel Dimont"'
Autor:
Peter Zhang, Emmanuel Dimont, Thomas Ha, Douglas J. Swanson, the FANTOM Consortium, Winston Hide, Dan Goldowitz
Publikováno v:
BMC Genomics, Vol 18, Iss 1, Pp 1-14 (2017)
Abstract Background Alternative transcription start site (TSS) usage plays important roles in transcriptional control of mammalian gene expression. The growing interest in alternative TSSs and their role in genome diversification spawned many single-
Externí odkaz:
https://doaj.org/article/d67530689a794bd8b92cc0bb25559cbb
Autor:
Peter Zhang, Emmanuel Dimont, Thomas Ha, Douglas J. Swanson, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, the FANTOM Consortium, Piero Carninci, Yoshihide Hayashizaki, Alistair R. R. Forrest, Winston Hide, Dan Goldowitz
Publikováno v:
BMC Genomics, Vol 19, Iss 1, Pp 1-2 (2018)
Correction The authors of the original article [1] would like to recognize the critical contribution of core members of the FANTOM5 Consortium, who played the critical role of HeliScopeCAGE sequencing experiments, quality control of tag reads and pro
Externí odkaz:
https://doaj.org/article/adffcb27c05645dea117ca994a12a3eb
Autor:
Wei Jie Seow, Angela Cecilia Pesatori, Emmanuel Dimont, Peter B Farmer, Benedetta Albetti, Adrienne S Ettinger, Valentina Bollati, Claudia Bolognesi, Paola Roggieri, Teodor I Panev, Tzveta Georgieva, Domenico Franco Merlo, Pier Alberto Bertazzi, Andrea A Baccarelli
Publikováno v:
PLoS ONE, Vol 7, Iss 12, p e50471 (2012)
Chronic occupational exposure to benzene is associated with an increased risk of hematological malignancies such as acute myeloid leukemia (AML), but the underlying mechanisms are still unclear. The main objective of this study was to investigate the
Externí odkaz:
https://doaj.org/article/81ca54f56ee2425da568eb6a120d17c6
Autor:
Thomas J. Ha, Winston Hide, Douglas J. Swanson, Emmanuel Dimont, Dan Goldowitz, Peter G. Zhang
Publikováno v:
BMC Genomics, Vol 18, Iss 1, Pp 1-14 (2017)
BMC Genomics
BMC Genomics
Background: Alternative transcription start site (TSS) usage plays important roles in transcriptional control of mammalian gene expression. The growing interest in alternative TSSs and their role in genome diversification spawned many single-gene stu
Autor:
Timo Lassmann, Thomas J. Ha, Douglas J. Swanson, Piero Carninci, Yoshihide Hayashizaki, Erik Arner, Dan Goldowitz, Peter G. Zhang, Alistair R. R. Forrest, Emmanuel Dimont, Masayoshi Itoh, Winston Hide, Carsten O. Daub, Hideya Kawaji
Publikováno v:
BMC Genomics
BMC Genomics, Vol 19, Iss 1, Pp 1-2 (2018)
BMC Genomics, Vol 19, Iss 1, Pp 1-2 (2018)
Alternative transcription start site (TSS) usage plays important roles in transcriptional control of mammalian gene expression. The growing interest in alternative TSSs and their role in genome diversification spawned many single-gene studies on diff
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::546dfa7555787fef9e599fecf71b9b58
Autor:
Enkhnasan Enkhbold, Stacy Scofield, Lora R. Dagi Glass, Pamela R. Sherwood, Jennifer Lira, Emmanuel Dimont, Bryan J. Winn
Publikováno v:
Ophthalmic Plastic & Reconstructive Surgery. 30:295-300
Purpose Despite multiple studies regarding modes of eyebrow measurement and movement over time, the lateral aspect of the brow has been relatively ignored in the literature. Therefore, we arranged a study of the most lateral aspect of the eyebrow; in
Publikováno v:
Bioinformatics
Summary: Next-generation sequencing platforms for measuring digital expression such as RNA-Seq are displacing traditional microarray-based methods in biological experiments. The detection of differentially expressed genes between groups of biological
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::16557ce6b223f3a4260d83a63d0b0bc8
https://eprints.whiterose.ac.uk/88899/1/WRRO_88899.pdf
https://eprints.whiterose.ac.uk/88899/1/WRRO_88899.pdf
Autor:
Masayoshi Itoh, Jayson Harshbarger, Fumi Hori, Toshiaki Katayama, Sachi Ishikawa-Kato, Derek W. Wright, Erik Arner, Yoshihide Hayashizaki, Hisashi Shimoji, Shiro Fukuda, Hiromasa Ono, Terrence F. Meehan, Rajaram Kaliyaperumal, Jessica Severin, Michael Rehli, Takeya Kasukawa, J Kenneth Baillie, Albin Sandelin, Carsten O. Daub, Alistair R. R. Forrest, Timo Lassmann, Hideya Kawaji, Tetsuro Toyoda, Tom C. Freeman, Alexander D. Diehl, Serkan Sahin, Erik Anthony Schultes, Piero Carninci, Hidemasa Bono, Emmanuel Dimont, Nicolas Bertin, Winston Hide, Kaori Fujieda, Koro Nishikata, Imad Abugessaisa, Christopher J. Mungall, Mark Thompson, Peter A C 't Hoen, Marina Lizio, Michiel J. L. de Hoon, Zuotian Tatum
Publikováno v:
Genome Biology
Lizio, M, Harshbarger, J, Shimoji, H, Severin, J, Kasukawa, T, Sahin, S, Abugessaisa, I, Fukuda, S, Hori, F, Ishikawa-Kato, S, Mungall, C J, Arner, E, Baillie, J K, Bertin, N, Bono, H, de Hoon, M, Diehl, A D, Dimont, E, Freeman, T C, Fujieda, K, Hide, W, Kaliyaperumal, R, Katayama, T, Lassmann, T, Meehan, T F, Nishikata, K, Ono, H, Rehli, M, Sandelin, A G, Schultes, E A, 't Hoen, P A C, Tatum, Z, Thompson, M, Toyoda, T, Wright, D W, Daub, C O, Itoh, M, Carninci, P, Hayashizaki, Y, Forrest, A R R & Kawaji, H 2015, ' Gateways to the FANTOM5 promoter level mammalian expression atlas ', Genome Biology (Online Edition), vol. 16, 22 . https://doi.org/10.1186/s13059-014-0560-6
Lizio, M, Harshbarger, J, Shimoji, H, Severin, J, Kasukawa, T, Sahin, S, Abugessaisa, I, Fukuda, S, Hori, F, Ishikawa-Kato, S, Mungall, C J, Arner, E, Baillie, J K, Bertin, N, Bono, H, de Hoon, M, Diehl, A D, Dimont, E, Freeman, T C, Fujieda, K, Hide, W, Kaliyaperumal, R, Katayama, T, Lassmann, T, Meehan, T F, Nishikata, K, Ono, H, Rehli, M, Sandelin, A, Schultes, E A, Hoen, P A C, Tatum, Z, Thompson, M, Toyoda, T, Wright, D W, Daub, C O, Itoh, M, Carninci, P, Hayashizaki, Y & Forrest, A R R & Kawaji, H 2015, ' Gateways to the FANTOM5 promoter level mammalian expression atlas ', Genome Biology, vol. 16, 22 . https://doi.org/10.1186/s13059-014-0560-6
Genome Biology, 16
Lizio, M, Harshbarger, J, Shimoji, H, Severin, J, Kasukawa, T, Sahin, S, Abugessaisa, I, Fukuda, S, Hori, F, Ishikawa-Kato, S, Mungall, C J, Arner, E, Baillie, J K, Bertin, N, Bono, H, de Hoon, M, Diehl, A D, Dimont, E, Freeman, T C, Fujieda, K, Hide, W, Kaliyaperumal, R, Katayama, T, Lassmann, T, Meehan, T F, Nishikata, K, Ono, H, Rehli, M, Sandelin, A G, Schultes, E A, 't Hoen, P A C, Tatum, Z, Thompson, M, Toyoda, T, Wright, D W, Daub, C O, Itoh, M, Carninci, P, Hayashizaki, Y, Forrest, A R R & Kawaji, H 2015, ' Gateways to the FANTOM5 promoter level mammalian expression atlas ', Genome Biology (Online Edition), vol. 16, 22 . https://doi.org/10.1186/s13059-014-0560-6
Lizio, M, Harshbarger, J, Shimoji, H, Severin, J, Kasukawa, T, Sahin, S, Abugessaisa, I, Fukuda, S, Hori, F, Ishikawa-Kato, S, Mungall, C J, Arner, E, Baillie, J K, Bertin, N, Bono, H, de Hoon, M, Diehl, A D, Dimont, E, Freeman, T C, Fujieda, K, Hide, W, Kaliyaperumal, R, Katayama, T, Lassmann, T, Meehan, T F, Nishikata, K, Ono, H, Rehli, M, Sandelin, A, Schultes, E A, Hoen, P A C, Tatum, Z, Thompson, M, Toyoda, T, Wright, D W, Daub, C O, Itoh, M, Carninci, P, Hayashizaki, Y & Forrest, A R R & Kawaji, H 2015, ' Gateways to the FANTOM5 promoter level mammalian expression atlas ', Genome Biology, vol. 16, 22 . https://doi.org/10.1186/s13059-014-0560-6
Genome Biology, 16
The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classif
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::58fe50e750efbb2fc09a7a6fdd3154aa
https://hdl.handle.net/1887/105508
https://hdl.handle.net/1887/105508
Autor:
Winston Hide, Hideya Kawaji, Oliver Hofmann, Emmanuel Dimont, Shannan J. Ho Sui, Alistair R. R. Forrest
Publikováno v:
Bioinformatics (Oxford, England). 30(8)
Summary Alternate promoter usage is an important molecular mechanism for generating RNA and protein diversity. Cap Analysis Gene Expression (CAGE) is a powerful approach for revealing the multiplicity of transcription start site (TSS) events across e
Autor:
Frank Brombacher, Wyeth W. Wasserman, Hiromasa Morikawa, Fumi Hori, Sayaka Nagao-Sato, Artem S. Kasianov, Mitsuhiro Endoh, Ilka Hoof, Hans Clevers, Hideki Tatsukawa, Anita Schwegmann, Kang Li, David A. de Lima Morais, Yoshihide Hayashizaki, Morana Vitezic, Judith A. Blake, Leonard Lipovich, Hozumi Motohashi, Timothy Ravasi, Meenhard Herlyn, Shuji Kawaguchi, Antti Sajantila, Haruhiko Koseki, Lukasz Huminiecki, Tsugumi Kawashima, Carrie A. Davis, Mamoon Rashid, Winston Hide, Alka Saxena, Mizuho Sakai, Carsten O. Daub, Kim M. Summers, Yuki Hasegawa, Hisashi Shimoji, Margaret Patrikakis, Efthymios Motakis, Morten Beck Rye, Dan Goldowitz, Masaaki Furuno, Lynsey Fairbairn, Alan Mackay-Sim, Andreas Lennartsson, John A.C. Archer, Mitsuru Morimoto, Harukazu Suzuki, Silvia Zucchelli, Weon Ju Lee, Hiroki Sato, Alan J. Knox, Margherita Francescatto, Xiaobei Zhao, Jay W. Shin, Thomas R. Gingeras, Soichi Ogishima, Jayson Harshbarger, Mark Thompson, Beatrice Bodega, Marco Chierici, Shintaro Katayama, Albin Sandelin, Sarah Rennie, Silvano Piazza, Tomokatsu Ikawa, Matthias Harbers, Magda Babina, Peter G. Zhang, Gabriel M. Altschule, Lenhard Vladimir B. Bajic, Andrew P. Gibson, Malcolm E. Fisher, Karl Ekwall, Yukio Nakamura, Arnab Pain, Michiel J. L. de Hoon, Toshio Kitamura, Anthony G Beckhouse, Ai Kaiho, Julian Gough, James Briggs, Jordan A. Ramilowski, Miki Kojima, Alistair R. R. Forrest, Erik Anthony Schultes, Jessica C. Mar, Dipti Vijayan, Peter Arner, S. Peter Klinken, Michael Rehli, Kazuhiro Kajiyama, Christophe Simon, Piero Carninci, Marco Roncador, Shigeo Koyasu, Mary C. Farach-Carson, Shigehiro Yoshida, Swati Pradhan-Bhatt, Zuotian Tatum, Masanori Suzuki, Mette C. Jørgensen, Benoit Marchand, Misako Yoneda, James Prendergast, Noriko Ninomiya, Tom C. Freeman, Yulia A. Medvedeva, Niklas Mejhert, Jun Takai, Alexander D. Diehl, Akiko Saka, Marc van de Wetering, Takehiro Hashimoto, Naoto Kondo, Martin S. Taylor, Albert S.B. Edge, Mutsumi Kanamori-Katayama, Colin A. Semple, Alexander V. Favorov, Giuseppe Jurman, Toshiyuki Nakamura, Thomas J. Ha, Yuri Ishizu, Shannan J. Ho Sui, David A. Hume, Owen J. L. Rackham, Michela Fagiolini, Daisuke Sugiyama, Helena Persson, Hironori Satoh, Robert Young, Emily J. Wood, Akira Hasegawa, Yosuke Mizuno, Juha Kere, Hiroshi Tanaka, Michihira Tagami, A. Maxwell Burroughs, Sugata Roy, Sachi Kato, Taeko Dohi, Hai Fang, Chieko Kai, Fumio Nakahara, Christian Schmidl, Hiromi Nishiyori, Thierry Sengstag, Sven Guhl, Kei Iida, Antje Blumenthal, Boris Lenhard, Sarah Krampitz, Peter A C 't Hoen, Piotr J. Balwierz, Masayuki Yamamoto, Eri Saijyo, Suzana Savvi, Intikhab Alam Altschuler, Marina Lizio, Alison M. Meynert, Kazuyo Moro, Kenichi Nakazato, Sebastian Schmeier, Carlo Vittorio Cannistraci, Yasushi Okazaki, Yishai Shimoni, Kelly J Hitchens, Hideki Enomoto, Jeroen F. J. Laros, Naganari Ohkura, Ilya E. Vorontsov, Davide Albanese, Hiroshi Ohno, Yun Chen, Terrence F. Meehan, Mitsuhiro Ohshima, Mitsuko Hara, Emiliano Dalla, Roberto Verardo, Claudio Schneider, Takahiro Arakawa, Oliver Hofmann, Matthias Edinger, Mariko Okada-Hatakeyama, Susan E. Zabierowski, Shohei Noma, Yutaka Nakachi, Shoko Watanabe, Kaoru Kaida, Mitsuyoshi Murata, Takaaki Sugiyama, Hui Jia, Tetsuro Toyoda, Naoko Suzuki, Vsevolod J. Makeev, Naoko Takahashi Tagami, Hiroko Ohmiya, Christine L. Mummery, Emmanuel Dimont, Shiro Fukuda, Jun Kawai, Ivan V. Kulakovskiy, Anthony Mathelier, Nicolas Bertin, Hiroshi Kawamoto, Vanja Haberle, Robert Passier, Levon M. Khachigian, Yuki I. Kawamura, Jessica Severin, Valerio Orlando, Takeya Kasukawa, Teunis B. H. Geijtenbeek, Charles Plessy, Ernst J. Wolvetang, Stefano Gustincich, Shimon Sakaguchi, Erik van Nimwegen, Reto Guler, Martin C. Frith, Andrea Califano, Timo Lassmann, Peter Heutink, Boris R. Jankovic, Ri Ichiroh Manabe, Berit Lilje, Yari Ciani, Erik Arner, Rie Fujita, Robin Andersson, J Kenneth Baillie, Andrew T. Kwon, Atsutaka Kubosaki, Jun Ichi Furusawa, Soichi Kojima, Daniel Carbajo, Christine A. Wells, Tadasuke Nozaki, Rolf Swoboda, Hiroo Toyoda, Tony J. Kenna, Yoko Yamaguchi, Hideya Kawaji, Louise N. Winteringham, Cesare Furlanello, Michael Detmar, Judith S. Kempfle, Bogumil Kaczkowski, Gundula G. Schulze-Tanzil, Linda M. van den Berg, Alessandro Bonetti, Eivind Valen, Masayoshi Itoh, Yohei Yonekura, Guojun Sheng, Ulf Schaefer, Masahide Hamaguchi, Patrizia Rizzu, Anagha Joshi, Dmitry A. Ovchinnikov, Finn Drabløs, Christopher J. Mungall, Geoffrey J. Faulkner
Publikováno v:
Nature, 507(7493), 462-70. Nature Publishing Group
Nature, 507(7493), 462-+. Nature Publishing Group
Forrest, A R R, Kawaji, H, Rehli, M, Baillie, J K, de Hoon, M J L, Haberle, V, Lassmann, T, Kulakovskiy, I V, Lizio, M, Itoh, M, Andersson, R, Mungall, C J, Meehan, T F, Schmeier, S, Bertin, N, Jorgensen, M, Dimont, E, Arner, E, Schmidl, C, Schaefer, U, Medvedeva, Y A, Plessy, C, Vitezic, M, Severin, J, Semple, C A, Ishizu, Y, Young, R S, Francescatto, M, Alam, I, Albanese, D, Altschuler, G M, Arakawa, T, Archer, J A C, Arner, P, Babina, M, Rennie, S, Balwierz, P J, Beckhouse, A G, Pradhan-Bhatt, S, Blake, J A, Blumenthal, A, Bodega, B, Bonetti, A, Briggs, J, Brombacher, F, Burroughs, A M, Califano, A, Cannistraci, C V, Carbajo, D, Chen, Y, Chierici, M, Ciani, Y, Clevers, H C, Dalla, E, Davis, C A, Detmar, M, Diehl, A D, Dohi, T, Drablos, F, Edge, A S B, Edinger, M, Ekwall, K, Endoh, M, Enomoto, H, Fagiolini, M, Fairbairn, L, Fang, H, Farach-Carson, M C, Faulkner, G J, Favorov, A V, Fisher, M E, Frith, M C, Fujita, R, Fukuda, S, Furlanello, C, Furuno, M, Furusawa, J, Geijtenbeek, T B, Gibson, A P, Gingeras, T, Goldowitz, D, Gough, J, Guhl, S, Guler, R, Gustincich, S, Ha, T J, Hamaguchi, M, Hara, M, Harbers, M, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, T, Herlyn, M, Hitchens, K J, Sui, S J H, Hofmann, O M, Hoof, I, Hori, F, Rizzu, P, Heutink, P, Carninci, P & Hayashizaki, Y 2014, ' A promoter-level mammalian expression atlas ', Nature, vol. 507, no. 7493, pp. 462-470 . https://doi.org/10.1038/nature13182
Nature, 507(7493), 462-470. Nature Publishing Group
Nature, 507(7493), 462
BASE-Bielefeld Academic Search Engine
Nature, 507(7493), 462-+. Nature Publishing Group
Forrest, A R R, Kawaji, H, Rehli, M, Baillie, J K, de Hoon, M J L, Haberle, V, Lassmann, T, Kulakovskiy, I V, Lizio, M, Itoh, M, Andersson, R, Mungall, C J, Meehan, T F, Schmeier, S, Bertin, N, Jorgensen, M, Dimont, E, Arner, E, Schmidl, C, Schaefer, U, Medvedeva, Y A, Plessy, C, Vitezic, M, Severin, J, Semple, C A, Ishizu, Y, Young, R S, Francescatto, M, Alam, I, Albanese, D, Altschuler, G M, Arakawa, T, Archer, J A C, Arner, P, Babina, M, Rennie, S, Balwierz, P J, Beckhouse, A G, Pradhan-Bhatt, S, Blake, J A, Blumenthal, A, Bodega, B, Bonetti, A, Briggs, J, Brombacher, F, Burroughs, A M, Califano, A, Cannistraci, C V, Carbajo, D, Chen, Y, Chierici, M, Ciani, Y, Clevers, H C, Dalla, E, Davis, C A, Detmar, M, Diehl, A D, Dohi, T, Drablos, F, Edge, A S B, Edinger, M, Ekwall, K, Endoh, M, Enomoto, H, Fagiolini, M, Fairbairn, L, Fang, H, Farach-Carson, M C, Faulkner, G J, Favorov, A V, Fisher, M E, Frith, M C, Fujita, R, Fukuda, S, Furlanello, C, Furuno, M, Furusawa, J, Geijtenbeek, T B, Gibson, A P, Gingeras, T, Goldowitz, D, Gough, J, Guhl, S, Guler, R, Gustincich, S, Ha, T J, Hamaguchi, M, Hara, M, Harbers, M, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, T, Herlyn, M, Hitchens, K J, Sui, S J H, Hofmann, O M, Hoof, I, Hori, F, Rizzu, P, Heutink, P, Carninci, P & Hayashizaki, Y 2014, ' A promoter-level mammalian expression atlas ', Nature, vol. 507, no. 7493, pp. 462-470 . https://doi.org/10.1038/nature13182
Nature, 507(7493), 462-470. Nature Publishing Group
Nature, 507(7493), 462
BASE-Bielefeld Academic Search Engine
Regulated transcription controls the diversity, developmental pathways and spatial organization of the hundreds of cell types that make up a mammal. Using single-molecule cDNA sequencing, we mapped transcription start sites (TSSs) and their usage in