Zobrazeno 1 - 10 of 33 pro vyhledávání: '"Emira, Cherif"'
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Akademický článek
Native drivers of fish life history traits are lost during the invasion process
Autor: Rodolphe Elie Gozlan, Eva Záhorská, Emira Cherif, Takashi Asaeda, John Robert Britton, Cha‐Ho Chang, To Hong, Rafael Miranda, Jiří Musil, Meta Povz, Ali Serhan Tarkan, Elena Tricarico, Teodora Trichkova, Hugo Verreycken, Andrej Weiperth, Andrej Witkowski, Lluis Zamora, Irene Zweimueller, Yahui Zhao, Hamid Reza Esmaeili, Marine Combe
Publikováno v: Ecology and Evolution, Vol 10, Iss 16, Pp 8623-8633 (2020)
Abstract Rapid adaptation to global change can counter vulnerability of species to population declines and extinction. Theoretically, under such circumstances both genetic variation and phenotypic plasticity can maintain population fitness, but empir
Externí odkaz: https://doaj.org/article/ce6d1aa05ac741b8a709e5a945317547
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4
ONTdeCIPHER: an amplicon-based nanopore sequencing pipeline for tracking pathogen variants
Autor: Emira Cherif, Fatou Seck Thiam, Mohammad Salma, Georgina Rivera-Ingraham, Fabienne Justy, Theo Deremarque, Damien Breugnot, Jean-Claude Doudou, Rodolphe Elie Gozlan, Marine Combe
Publikováno v: Bioinformatics. 38:2033-2035
Motivation Amplicon-based nanopore sequencing is increasingly used for molecular surveillance during epidemics (e.g. ZIKA, EBOLA) or pandemics (e.g. SARS-CoV-2). However, there is still a lack of versatile and easy-to-use tools that allow users with
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7846ccc2bc098eb72669279b37a6c85d
https://doi.org/10.1093/bioinformatics/btac043
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5
The influence of native populations’ genetic history on the reconstruction of invasion routes: the case of a highly invasive aquatic species
Autor: Thomas Brazier, Emira Cherif, Jean-François Martin, André Gilles, Simon Blanchet, Yahui Zhao, Marine Combe, R. J. Scott McCairns, Rodolphe E. Gozlan
Publikováno v: Biological Invasions (1387-3547) (Springer Science and Business Media LLC), 2022-08, Vol. 24, N. 8, P. 2399-2420
Biological Invasions
Biological Invasions, 2022, 24, pp.2399-2420. ⟨10.1007/s10530-022-02787-6⟩
Data availability: All sequencing data (GBS reads) are publicly-available under the BioProject ID PRJNA799666. The original genetic data yielded by genotyping (in vcf format), additional metadata (e.g. geographical coordinates) and all scripts necess
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e390ac2bc20f519a6126eecda92b8bff
https://archimer.ifremer.fr/doc/00763/87463/
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6
Structural variation turnovers and defective genomes: key drivers for the in vitro evolution of the large double-stranded DNA koi herpesvirus (KHV)
Autor: Nurul Novelia Fuandila, Anne-Sophie Gosselin-Grenet, Marie-Ka Tilak, Sven M Bergmann, Jean-Michel Escoubas, Sandro Klafack, Angela Mariana Lusiastuti, Munti Yuhana, Anna-Sophie Fiston-Lavier, Jean-Christophe Avarre, Emira Cherif
Publikováno v: Peer Community Journal. Section: Infections (2804-3871) (Centre Mersienne), 2022-07-29, Vol. 2, P. e44 (14p.)
Peer Community Journal
Peer Community Journal, 2022, ⟨10.24072/pcjournal.154⟩
Structural variations (SVs) constitute a significant source of genetic variability in virusgenomes. Yet knowledge about SV variability and contribution to the evolutionaryprocess in large double-stranded (ds)DNA viruses is limited. Cyprinid herpesvir
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6fe8b9d2c82c465bb7fecd9c41d38314
https://doi.org/10.24072/pcjournal.154
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8
Native drivers of fish life history traits are lost during the invasion process
Autor: Eva Záhorská, Hugo Verreycken, Rodolphe E. Gozlan, Meta Povz, Cha-Ho Chang, Teodora Trichkova, John Robert Britton, Hamid Reza Esmaeili, To Hong, Rafael Miranda, Lluís Zamora, Emira Cherif, Andrej Weiperth, Takashi Asaeda, Ali Serhan Tarkan, Irene Zweimueller, Yahui Zhao, Elena Tricarico, Jiří Musil, Andrej Witkowski, Marine Combe
Publikováno v: Ecology and Evolution, Vol 10, Iss 16, Pp 8623-8633 (2020)
Ecology and Evolution
Rapid adaptation to global change can counter vulnerability of species to population declines and extinction. Theoretically, under such circumstances both genetic variation and phenotypic plasticity can maintain population fitness, but empirical supp
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eddbb2de9f3c64e42911d2931fa6f51c
https://doi.org/10.1002/ece3.6521
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9
Finding and Characterizing Repeats in Plant Genomes
Autor: Jacques, Nicolas, Sébastien, Tempel, Anna-Sophie, Fiston-Lavier, Emira, Cherif
Publikováno v: Methods in molecular biology (Clifton, N.J.). 2443
Plant genomes contain a particularly high proportion of repeated structures of various types. This chapter proposes a guided tour of the available software that can help biologists to scan automatically for these repeats in sequence data or check hyp
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::3db22acb1231f4dc05ea8e8c94c34639
https://pubmed.ncbi.nlm.nih.gov/35037215
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