biotoolsSchema: a formalized schema for bioinformatics software description

Autor: Jacques van Helden, Hervé Ménager, Emil Karol Rydza, Veit Schwämmle, Jon Ison, Alban Gaignard, Kristoffer Rapacki, Matúš Kalaš, Hans Ienasescu, Piotr Jaroslaw Chmura

Publikováno v: GigaScience
GigaScience, 2021, 10 (1), pp.giaa157. ⟨10.1093/gigascience/giaa157⟩
Ison, J, Ienasescu, H, Rydza, E, Chmura, P, Rapacki, K, Gaignard, A, Schwämmle, V, van Helden, J, Kalaš, M & Ménager, H 2021, ' biotoolsSchema : a formalized schema for bioinformatics software description ', GigaScience, vol. 10, no. 1 . https://doi.org/10.1093/gigascience/giaa157
GigaScience, BioMed Central, 2021, 10 (1), ⟨10.1093/gigascience/giaa157⟩
Ison, J, Ienasescu, H, Rydza, E, Chmura, P, Rapacki, K, Gaignard, A, Schwämmle, V, Van Helden, J, Kalaš, M & Ménager, H 2021, ' biotoolsSchema : a formalized schema for bioinformatics software description ', GigaScience, vol. 10, no. 1, giaa157 . https://doi.org/10.1093/gigascience/giaa157
giaa157

Background Life scientists routinely face massive and heterogeneous data analysis tasks and must find and access the most suitable databases or software in a jungle of web-accessible resources. The diversity of information used to describe life-scien

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http://europepmc.org/articles/PMC7842104

Tools and data services registry: a community effort to document bioinformatics resources

Autor: Callum Smith, Paolo Uva, Thomas Gatter, Peter Løngreen, Peter Juvan, Hans Ienasescu, Giuseppe Profiti, Aleksandra Nenadic, Kristoffer Rapacki, Chris Morris, Paola Roncaglia, Steffen Möller, Laura Emery, Søren Brunak, Maria Maddalena Sperotto, Heinz Stockinger, Kristian Davidsen, Federico Zambelli, Helen Parkinson, Olivia Doppelt-Azeroual, Luana Licata, Tatyana Goldberg, Andrea Schafferhans, Elisabeth Gasteiger, Emil Karol Rydza, Camille Laibe, Victor De La Torre, Marie Grosjean, Manuela Helmer-Citterich, Hervé Ménager, Radka Svobodová Vařeková, Rafael C. Jimenez, Martin Closter Jespersen, Anthony Bretaudeau, Jan Brezovsky, Tunca Doğan, Matúš Kalaš, Peter M. Rice, Ivan Mičetić, Rune Møllegaard Friborg, Maximilian Koch, Silvio C. E. Tosatto, Nick Juty, Björn Grüning, Gianmauro Cuccuru, Frederik Coppens, Gianni Cesareni, Jon Ison, Rabie Saidi, Sébastien Moretti, Rita Casadio, Gert Vriend, Guy Yachdav, Niall Beard, Timothy F. Booth, Michael Cornell, Piotr Jaroslaw Chmura, Veit Schwämmle, Karel Berka, Dan Bolser, Vassilios Ioannidis, Jing-Woei Li, Burkhard Rost, Gianluca Della Vedova, Fabien Mareuil, Hedi Peterson, Allegra Via, Paolo Romano, Christian Anthon

Publikováno v: Nucleic Acids Research, vol. 44, no. D1, pp. D38-D47
Nucleic Acids Research
Nucleic acids research 44 (2016): D38–D47. doi:10.1093/nar/gkv1116
info:cnr-pdr/source/autori:Ison, Jon; Rapacki, Kristoffer; Ménager, Hervé; Kala?, Matú?; Rydza, Emil; Chmura, Piotr; Anthon, Christian; Beard, Niall; Berka, Karel; Bolser, Dan; Booth, Tim; Bretaudeau, Anthony; Brezovsky, Jan; Casadio, Rita; Cesareni, Gianni; Coppens, Frederik; Cornell, Michael; Cuccuru, Gianmauro; Davidsen, Kristian; Della Vedova, Gianluca; Dogan, Tunca; Doppelt-Azeroual, Olivia; Emery, Laura; Gasteiger, Elisabeth; Gatter, Thomas; Goldberg, Tatyana; Grosjean, Marie; Gruüing, Björn; Helmer-Citterich, Manuela; Ienasescu, Hans; Ioannidis, Vassilios; Jespersen, Martin Closter; Jimenez, Rafael; Juty, Nick; Juvan, Peter; Koch, Maximilian; Laibe, Camille; Li, Jing Woei; Licata, Luana; Mareuil, Fabien; Mi?eti?, Ivan; Friborg, Rune Møllegaard; Moretti, Sebastien; Morris, Chris; Möller, Steffen; Nenadic, Aleksandra; Peterson, Hedi; Profiti, Giuseppe; Rice, Peter; Romano, Paolo; Roncaglia, Paola; Saidi, Rabie; Schafferhans, Andrea; Schwämmle, Veit; Smith, Callum; Sperotto, Maria Maddalena; Stockinger, Heinz; Var?ková, Radka Svobodová; Tosatto, Silvio C.E.; De La Torre, Victor; Uva, Paolo; Via, Allegra; Yachdav, Guy; Zambelli, Federico; Vriend, Gert; Rost, Burkhard; Parkinson, Helen; Løngreen, Peter; Brunak, Søren/titolo:Tools and data services registry: A community effort to document bioinformatics resources/doi:10.1093%2Fnar%2Fgkv1116/rivista:Nucleic acids research/anno:2016/pagina_da:D38/pagina_a:D47/intervallo_pagine:D38–D47/volume:44
Nucleic Acids Research, Oxford University Press, 2016, 44 (D1), pp.D38-47. ⟨10.1093/nar/gkv1116⟩
NUCLEIC ACIDS RESEARCH
Møllegaard Friborg, R, Jon Ison, Kristoffer Rapacki, Hervé Ménager, Matúš Kalaš, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael Jimenez, Nick Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Mičetić & Sebastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vařeková, Silvio C.E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen Parkinson, Peter Løngreen, Søren Brunak 2015, ' Tools and data services registry: a community effort to document bioinformatics resources ', Nucleic Acids Research, vol. 44, no. D1, pp. D38-D47 . https://doi.org/10.1093/nar/gkv1116
Ison, J, Rapacki, K, Ménager, H, Kalaš, M, Rydza, E, Chmura, P, Anthon, C, Beard, N, Berka, K, Bolser, D, Booth, T, Bretaudeau, A, Brezovsky, J, Casadio, R, Cesareni, G, Coppens, F, Cornell, M, Cuccuru, G, Davidsen, K, Vedova, G D, Dogan, T, Doppelt-Azeroual, O, Emery, L, Gasteiger, E, Gatter, T, Goldberg, T, Grosjean, M, Grüning, B, Helmer-Citterich, M, Ienasescu, H-I, Ioannidis, V, Jespersen, M C, Jimenez, R, Juty, N, Juvan, P, Koch, M, Laibe, C, Li, J-W, Licata, L, Mareuil, F, Mičetić, I, Friborg, R M, Moretti, S, Morris, C, Möller, S, Nenadic, A, Peterson, H, Profiti, G, Rice, P, Romano, P, Roncaglia, P, Saidi, R, Schafferhans, A, Schwämmle, V, Smith, C, Sperotto, M M, Stockinger, H, Vařeková, R S, Tosatto, S C E, de la Torre, V, Uva, P, Via, A, Yachdav, G, Zambelli, F, Vriend, G, Rost, B, Parkinson, H, Løngreen, P & Brunak, S 2016, ' Tools and data services registry : a community effort to document bioinformatics resources ', Nucleic Acids Research, vol. 44, no. D1, pp. D38-D47 . https://doi.org/10.1093/nar/gkv1116
Ison, J, Rapacki, K, Ménager, H, Kalaš, M, Rydza, E, Chmura, P, Anthon, C, Beard, N, Berka, K, Bolser, D, Booth, T, Bretaudeau, A, Brezovsky, J, Casadio, R, Cesareni, G, Coppens, F, Cornell, M, Cuccuru, G, Davidsen, K, Vedova, G D, Dogan, T, Doppelt-Azeroual, O, Emery, L, Gasteiger, E, Gatter, T, Goldberg, T, Grosjean, M, Grüning, B, Helmer-Citterich, M, Ienasescu, H, Ioannidis, V, Jespersen, M C, Jimenez, R, Juty, N, Juvan, P, Koch, M, Laibe, C, Li, J-W, Licata, L, Mareuil, F, Mičetić, I, Friborg, R M, Moretti, S, Morris, C, Möller, S, Nenadic, A, Peterson, H, Profiti, G, Rice, P, Romano, P, Roncaglia, P, Saidi, R, Schafferhans, A, Schwämmle, V, Smith, C, Sperotto, M M, Stockinger, H, Vařeková, R S, Tosatto, S C E, de la Torre, V, Uva, P, Via, A, Yachdav, G, Zambelli, F, Vriend, G, Rost, B, Parkinson, H, Løngreen, P & Brunak, S 2016, ' Tools and data services registry : a community effort to document bioinformatics resources ', Nucleic Acids Research, vol. 44, no. D1, pp. D38–D47 . https://doi.org/10.1093/nar/gkv1116
Nucleic Acids Research, 2016, 44 (D1), pp.D38-47. ⟨10.1093/nar/gkv1116⟩
Nucleic Acids Research, 44, D1, pp. D38-47
Nucleic Acids Research, 44, D38-47
Nucleic Acids Research D1 (44), D38-47. (2016)
Ison, J, Rapacki, K, Ménager, H, Kalaš, M, Rydza, E K, Chmura, P J, Anthon, C, Beard, N, Berka, K, Bolser, D, Booth, T, Bretaudeau, A, Brezovsky, J, Casadio, R, Cesareni, G, Coppens, F, Cornell, M, Cuccuru, G, Davidsen, K, Vedova, G D, Dogan, T, Doppelt-Azeroual, O, Emery, L, Gasteiger, E, Gatter, T, Goldberg, T, Grosjean, M, Grüning, B, Helmer-Citterich, M, Ienasescu, H, Ioannidis, V, Jespersen, M C, Jimenez, R, Juty, N, Juvan, P, Koch, M, Laibe, C, Li, J-W, Licata, L, Mareuil, F, Mičetić, I, Friborg, R M, Moretti, S, Morris, C, Möller, S, Nenadic, A, Peterson, H, Profiti, G, Rice, P, Romano, P, Roncaglia, P, Saidi, R, Schafferhans, A, Schwämmle, V, Smith, C, Sperotto, M M, Stockinger, H, Vařeková, R S, Tosatto, S C E, de la Torre, V, Uva, P, Via, A, Yachdav, G, Zambelli, F, Vriend, G, Rost, B, Parkinson, H, Løngreen, P & Brunak, S 2016, ' Tools and data services registry : a community effort to document bioinformatics resources ', Nucleic Acids Research, vol. 44, no. D1, gkv1116, pp. D38-D47 . https://doi.org/10.1093/nar/gkv1116

Contains fulltext : 171819.pdf (Publisher’s version ) (Open Access) Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these disc

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