PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models

Autor: Elly Poretsky, Carson M. Andorf, Taner Z. Sen

Publikováno v: Plant Direct, Vol 7, Iss 12, Pp n/a-n/a (2023)

Abstract Protein phosphorylation is a dynamic and reversible post‐translational modification that regulates a variety of essential biological processes. The regulatory role of phosphorylation in cellular signaling pathways, protein–protein intera

Externí odkaz: https://doaj.org/article/91d17fbd625d4f5e8c65792a3a759e58

MutRank: an R shiny web-application for exploratory targeted mutual rank-based coexpression analyses integrated with user-provided supporting information

Autor: Elly Poretsky, Alisa Huffaker

Publikováno v: PeerJ, Vol 8, p e10264 (2020)

The rapid assignment of genotypes to phenotypes has been a historically challenging process. The discovery of genes encoding biosynthetic pathway enzymes for defined plant specialized metabolites has been informed and accelerated by the detection of

Externí odkaz: https://doaj.org/article/72a8e9502ad34c75863a64003ab7357e

Calcium specificity signaling mechanisms in abscisic acid signal transduction in Arabidopsis guard cells

Autor: Benjamin Brandt, Shintaro Munemasa, Cun Wang, Desiree Nguyen, Taiming Yong, Paul G Yang, Elly Poretsky, Thomas F Belknap, Rainer Waadt, Fernando Alemán, Julian I Schroeder

Publikováno v: eLife, Vol 4 (2015)

A central question is how specificity in cellular responses to the eukaryotic second messenger Ca2+ is achieved. Plant guard cells, that form stomatal pores for gas exchange, provide a powerful system for in depth investigation of Ca2+-signaling spec

Externí odkaz: https://doaj.org/article/4eb6fc04c54249b6ac999b1d916a5a73

Shielding the oil reserves:the scutellum as a source of chemical defenses

Autor: Katherine M Murphy, Elly Poretsky, Huijun Liu, Nikola Micic, Annika Nyhuis, Joerg Bohlmann, Eric A Schmelz, Philipp Zerbe, Alisa Huffaker, Nanna Bjarnholt

Publikováno v: Murphy, K M, Poretsky, E, Liu, H, Micic, N, Nyhuis, A, Bohlmann, J, Schmelz, E A, Zerbe, P, Huffaker, A & Bjarnholt, N 2022, ' Shielding the oil reserves : the scutellum as a source of chemical defenses ', Plant Physiology, vol. 188, no. 4, pp. 1944-1949 . https://doi.org/10.1093/plphys/kiac038
Plant physiology, vol 188, iss 4
Murphy, K M, Poretsky, E, Liu, H, Micic, N, Nyhuis, A, Bohlmann, J, Schmelz, E A, Zerbe, P, Huffaker, A & Bjarnholt, N 2022, ' Shielding the oil reserves : The scutellum as a source of chemical defenses ', Plant Physiology, vol. 188, no. 4, pp. 1944-1949 . https://doi.org/10.1093/plphys/kiac038

The cereal scutellum is a hub for diverse specialized defense metabolism and pathway discovery.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f8f60348bbc6a3d856dd3a84d08d552f
https://curis.ku.dk/portal/da/publications/shielding-the-oil-reserves(299fec57-af0c-4042-982c-6fff25db0464).html

A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance

Autor: Sowmya Poosapati, Elly Poretsky, Keini Dressano, Miguel Ruiz, Armando Vazquez, Evan Sandoval, Adelaida Estrada-Cardenas, Sarthak Duggal, Jia-Hui Lim, Geoffrey Morris, Adrianna Szczepaniec, Spencer S. Walse, Xinzhi Ni, Eric A. Schmelz, Alisa Huffaker

Publikováno v: PlantaReferences. 255(2)

A WRKY transcription factor identified through forward genetics is associated with sorghum resistance to the sugarcane aphid and through heterologous expression reduces aphid populations in multiple plant species. Crop plant resistance to insect pest

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b95fbaa8ea7d972ff2cb503cda0db69e
https://pubmed.ncbi.nlm.nih.gov/35020066