Zobrazeno 1 - 10
of 23
pro vyhledávání: '"Elena Czeizler"'
Autor:
Anssi Rantasalo, Elena Czeizler, Riitta Virtanen, Juho Rousu, Harri Lähdesmäki, Merja Penttilä, Jussi Jäntti, Dominik Mojzita
Publikováno v:
PLoS ONE, Vol 11, Iss 2, p e0148320 (2016)
This work describes the development and characterization of a modular synthetic expression system that provides a broad range of adjustable and predictable expression levels in S. cerevisiae. The system works as a fixed-gain transcription amplifier,
Externí odkaz:
https://doaj.org/article/11ded2db58eb470fadd096c3e3fff2c1
Publikováno v:
PLoS ONE, Vol 9, Iss 3, p e90801 (2014)
DNA microarray technologies are used extensively to profile the expression levels of thousands of genes under various conditions, yielding extremely large data-matrices. Thus, analyzing this information and extracting biologically relevant knowledge
Externí odkaz:
https://doaj.org/article/1665e9f1950b4ba3a8ddcaaddf493d05
Autor:
Mikko Hakala, Esa Kuusela, Petr Jordan, Wolfgang Wiessler, Shahab Basiri, Thorben Koester, Elena Czeizler
Publikováno v:
Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB). 72
Purpose In this study we trained a deep neural network model for female pelvis organ segmentation using data from several sites without any personal data sharing. The goal was to assess its prediction power compared with the model trained in a centra
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::26b0b974e590c4bfcb5c439aa818ed53
https://pubmed.ncbi.nlm.nih.gov/32197221
https://pubmed.ncbi.nlm.nih.gov/32197221
The (abstract) Tile Assembly Model (aTAM), is a mathematical paradigm for the study and algorithmic design of DNA self-assembly systems. It employs the use of so-called DNA-tiles, which are abstractions of experimentally achievable DNA nanostructure
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c2d2c8180e5c5a70e38c39680b5d3187
https://aaltodoc.aalto.fi/handle/123456789/36667
https://aaltodoc.aalto.fi/handle/123456789/36667
Publikováno v:
IEEE/ACM transactions on computational biology and bioinformatics. 14(1)
Motif recognition is a challenging problem in bioinformatics due to the diversity of protein motifs. Many existing algorithms identify motifs of a given length, thus being either not applicable or not efficient when searching simultaneously for motif
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::674f558ad9237eb078168cef11a5fd5d
https://pubmed.ncbi.nlm.nih.gov/28055896
https://pubmed.ncbi.nlm.nih.gov/28055896
Autor:
Elena Czeizler, Juho Rousu, Merja Penttilä, Dominik Mojzita, Jussi Jäntti, Riitta Virtanen, Anssi Rantasalo, Harri Lähdesmäki
Publikováno v:
PLoS ONE, Vol 11, Iss 2, p e0148320 (2016)
PLoS ONE
Rantasalo, A, Czeizler, E, Virtanen, R, Rousu, J, Lähdesmäki, H, Penttilä, M, Jäntti, J & Mojzita, D 2016, ' Synthetic transcription amplifier system for orthogonal control of gene expression in saccharomyces cerevisiae ', PLoS ONE, vol. 11, no. 2, e0148320 . https://doi.org/10.1371/journal.pone.0148320
PLoS ONE
Rantasalo, A, Czeizler, E, Virtanen, R, Rousu, J, Lähdesmäki, H, Penttilä, M, Jäntti, J & Mojzita, D 2016, ' Synthetic transcription amplifier system for orthogonal control of gene expression in saccharomyces cerevisiae ', PLoS ONE, vol. 11, no. 2, e0148320 . https://doi.org/10.1371/journal.pone.0148320
This work describes the development and characterization of a modular synthetic expression system that provides a broad range of adjustable and predictable expression levels in S. cerevisiae. The system works as a fixed-gain transcription amplifier,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96fbc8b764ed44cc676a06a5b5ef879d
http://europepmc.org/articles/PMC4762949?pdf=render
http://europepmc.org/articles/PMC4762949?pdf=render
Publikováno v:
Electronic Notes in Theoretical Computer Science. 284:35-53
Building a large system through a systematic, step-by-step refinement of an initial abstract specification is a well established technique in software engineering, not yet much explored in systems biology. In the case of systems biology, one starts f
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::02b44f6b988ddc6c63fb3f5b6d549cbb
https://doi.org/10.1016/j.entcs.2012.05.014
https://doi.org/10.1016/j.entcs.2012.05.014
Autor:
Elena Czeizler, Andrzej Mizera, Ralph-Johan Back, Eugen Czeizler, John E. Eriksson, Ion Petre
Publikováno v:
IEEE/ACM Transactions on Computational Biology and Bioinformatics. 9:885-898
In vitro assembly of intermediate filaments from tetrameric vimentin consists of a very rapid phase of tetramers laterally associating into unit-length filaments and a slow phase of filament elongation. We focus in this paper on a systematic quantita
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c08efa84aba607ae4f0dc0769943ebc4
https://doi.org/10.1109/tcbb.2011.154
https://doi.org/10.1109/tcbb.2011.154
Publikováno v:
Fundamenta Informaticae. 116:51-63
To disentangle the numerical contribution of modules to the system-level behavior of a given biomodel, one often considers knock-out mutant models, investigating the change in the model behavior when modules are systematically included and excluded f
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5a4fd4d7f78117244d9a412ea8402946
https://doi.org/10.3233/fi-2012-668
https://doi.org/10.3233/fi-2012-668
Publikováno v:
Information and Computation. 209:717-730
One of the particularities of information encoded as DNA strands is that a string u contains basically the same information as its Watson-Crick complement, denoted here as @q(u). Thus, any expression consisting of repetitions of u and @q(u) can be co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1d15c1eb0512d60baff257080f258aa0
https://doi.org/10.1016/j.ic.2011.01.001
https://doi.org/10.1016/j.ic.2011.01.001