Multi-scale V-net architecture with deep feature CRF layers for brain extraction

Autor: Jong Sung Park, Shreyas Fadnavis, Eleftherios Garyfallidis

Publikováno v: Communications Medicine, Vol 4, Iss 1, Pp 1-12 (2024)

Abstract Background Brain extraction is a computational necessity for researchers using brain imaging data. However, the complex structure of the interfaces between the brain, meninges and human skull have not allowed a highly robust solution to emer

Externí odkaz: https://doaj.org/article/29cf9772ed43402e8356225280ced95f

What’s new and what’s next in diffusion MRI preprocessing

Autor: Chantal M.W. Tax, Matteo Bastiani, Jelle Veraart, Eleftherios Garyfallidis, M. Okan Irfanoglu

Publikováno v: NeuroImage, Vol 249, Iss , Pp 118830- (2022)

Diffusion MRI (dMRI) provides invaluable information for the study of tissue microstructure and brain connectivity, but suffers from a range of imaging artifacts that greatly challenge the analysis of results and their interpretability if not appropr

Externí odkaz: https://doaj.org/article/83add749594545eea568c3968750d097

Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?

Autor: Kurt G. Schilling, François Rheault, Laurent Petit, Colin B. Hansen, Vishwesh Nath, Fang-Cheng Yeh, Gabriel Girard, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Elda Fischi-Gomez, Marco Pizzolato, Mario Ocampo-Pineda, Simona Schiavi, Erick J. Canales-Rodríguez, Alessandro Daducci, Cristina Granziera, Giorgio Innocenti, Jean-Philippe Thiran, Laura Mancini, Stephen Wastling, Sirio Cocozza, Maria Petracca, Giuseppe Pontillo, Matteo Mancini, Sjoerd B. Vos, Vejay N. Vakharia, John S. Duncan, Helena Melero, Lidia Manzanedo, Emilio Sanz-Morales, Ángel Peña-Melián, Fernando Calamante, Arnaud Attyé, Ryan P. Cabeen, Laura Korobova, Arthur W. Toga, Anupa Ambili Vijayakumari, Drew Parker, Ragini Verma, Ahmed Radwan, Stefan Sunaert, Louise Emsell, Alberto De Luca, Alexander Leemans, Claude J. Bajada, Hamied Haroon, Hojjatollah Azadbakht, Maxime Chamberland, Sila Genc, Chantal M.W. Tax, Ping-Hong Yeh, Rujirutana Srikanchana, Colin D. Mcknight, Joseph Yuan-Mou Yang, Jian Chen, Claire E. Kelly, Chun-Hung Yeh, Jerome Cochereau, Jerome J. Maller, Thomas Welton, Fabien Almairac, Kiran K Seunarine, Chris A. Clark, Fan Zhang, Nikos Makris, Alexandra Golby, Yogesh Rathi, Lauren J. O'Donnell, Yihao Xia, Dogu Baran Aydogan, Yonggang Shi, Francisco Guerreiro Fernandes, Mathijs Raemaekers, Shaun Warrington, Stijn Michielse, Alonso Ramírez-Manzanares, Luis Concha, Ramón Aranda, Mariano Rivera Meraz, Garikoitz Lerma-Usabiaga, Lucas Roitman, Lucius S. Fekonja, Navona Calarco, Michael Joseph, Hajer Nakua, Aristotle N. Voineskos, Philippe Karan, Gabrielle Grenier, Jon Haitz Legarreta, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Andrew L. Alexander, Koji Kamagata, Yuya Saito, Wataru Uchida, Christina Andica, Masahiro Abe, Roza G. Bayrak, Claudia A.M. Gandini Wheeler-Kingshott, Egidio D'Angelo, Fulvia Palesi, Giovanni Savini, Nicolò Rolandi, Pamela Guevara, Josselin Houenou, Narciso López-López, Jean-François Mangin, Cyril Poupon, Claudio Román, Andrea Vázquez, Chiara Maffei, Mavilde Arantes, José Paulo Andrade, Susana Maria Silva, Vince D. Calhoun, Eduardo Caverzasi, Simone Sacco, Michael Lauricella, Franco Pestilli, Daniel Bullock, Yang Zhan, Edith Brignoni-Perez, Catherine Lebel, Jess E Reynolds, Igor Nestrasil, René Labounek, Christophe Lenglet, Amy Paulson, Stefania Aulicka, Sarah R. Heilbronner, Katja Heuer, Bramsh Qamar Chandio, Javier Guaje, Wei Tang, Eleftherios Garyfallidis, Rajikha Raja, Adam W. Anderson, Bennett A. Landman, Maxime Descoteaux

Publikováno v: NeuroImage, Vol 243, Iss , Pp 118502- (2021)

White matter bundle segmentation using diffusion MRI fiber tractography has become the method of choice to identify white matter fiber pathways in vivo in human brains. However, like other analyses of complex data, there is considerable variability i

Externí odkaz: https://doaj.org/article/d2f43c7d890749b4be784f2e814a17e8

Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project

Autor: Rafael Neto Henriques, Marta M. Correia, Maurizio Marrale, Elizabeth Huber, John Kruper, Serge Koudoro, Jason D. Yeatman, Eleftherios Garyfallidis, Ariel Rokem

Publikováno v: Frontiers in Human Neuroscience, Vol 15 (2021)

Diffusion-weighted magnetic resonance imaging (dMRI) measurements and models provide information about brain connectivity and are sensitive to the physical properties of tissue microstructure. Diffusional Kurtosis Imaging (DKI) quantifies the degree

Externí odkaz: https://doaj.org/article/854513573ba749dfa755b5721e5c1833

A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles

Autor: Martin Cousineau, Pierre-Marc Jodoin, Eleftherios Garyfallidis, Marc-Alexandre Côté, Félix C. Morency, Verena Rozanski, Marilyn Grand’Maison, Barry J. Bedell, Maxime Descoteaux

Publikováno v: NeuroImage: Clinical, Vol 16, Iss , Pp 222-233 (2017)

In this work, we propose a diffusion MRI protocol for mining Parkinson's disease diffusion MRI datasets and recover robust disease-specific biomarkers. Using advanced high angular resolution diffusion imaging (HARDI) crossing fiber modeling and tract

Externí odkaz: https://doaj.org/article/9270cca3dd2c4c2a9a119133c8f1857a