Zobrazeno 1 - 6
of 6
pro vyhledávání: '"Eik Dahms"'
Autor:
Adrian Fritz, Peter Hofmann, Stephan Majda, Eik Dahms, Johannes Dröge, Jessika Fiedler, Till R. Lesker, Peter Belmann, Matthew Z. DeMaere, Aaron E. Darling, Alexander Sczyrba, Andreas Bremges, Alice C. McHardy
Publikováno v:
Microbiome, Vol 7, Iss 1, Pp 1-12 (2019)
Abstract Background Shotgun metagenome data sets of microbial communities are highly diverse, not only due to the natural variation of the underlying biological systems, but also due to differences in laboratory protocols, replicate numbers, and sequ
Externí odkaz:
https://doaj.org/article/691fffe684ce4951892d70988eef06af
Autor:
Tatsuya Nobori, Yu Cao, Frederickson Entila, Eik Dahms, Yayoi Tsuda, Ruben Garrido‐Oter, Kenichi Tsuda
Publikováno v:
EMBO Reports
Interactions between plants and neighboring microbial species are fundamental elements that collectively determine the structure and function of the plant microbiota. However, the molecular basis of such interactions is poorly characterized. Here, we
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d784af0b527fc22b1086d0d20619b6c1
https://hdl.handle.net/21.11116/0000-000B-EEC4-C21.11116/0000-000B-EEC6-A
https://hdl.handle.net/21.11116/0000-000B-EEC4-C21.11116/0000-000B-EEC6-A
Autor:
Rafal Zgadzaj, Pengfan Zhang, Rui Guan, Niklas Kiel, Ke Tao, Kathrin Wippel, Simona Radutoiu, Elke Logemann, Paul Schulze-Lefert, Dorthe Bødker Jensen, Ruben Garrido-Oter, Yulong Niu, Eik Dahms
Publikováno v:
Wippel, K, Tao, K, Niu, Y, Zgadzaj, R, Kiel, N, Guan, R, Dahms, E, Zhang, P, Jensen, D B, Logemann, E, Radutoiu, S, Schulze-Lefert, P & Garrido-Oter, R 2021, ' Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota ', Nature Microbiology, vol. 6, no. 9, pp. 1150-1162 . https://doi.org/10.1038/s41564-021-00941-9
Nature Microbiology
Nature Microbiology
Roots of different plant species are colonized by bacterial communities, that are distinct even when hosts share the same habitat. It remains unclear to what extent the host actively selects these communities and whether commensals are adapted to a s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4cc05ae39b8a5900e8312abc661dc40e
https://doi.org/10.1038/s41564-021-00941-9
https://doi.org/10.1038/s41564-021-00941-9
Autor:
Eik Dahms, Kenichi Tsuda, Aneta Sawikowska, Thomas M. Winkelmüller, Karolina Kułak, Baoxing Song, Stefan Laurent, Frederickson Entila, Ruben Garrido-Oter, Paweł Bednarek, Hitoshi Sakakibara, Xiangchao Gan, Paul Schulze-Lefert, Shajahan Anver, Kenji Fukushima, Anna Piasecka, Paweł Krajewski, Miltos Tsiantis
Publikováno v:
The Plant Cell
Plant Cell
Plant Cell
Plants recognize surrounding microbes by sensing microbe-associated molecular patterns (MAMPs) to activate pattern-triggered immunity (PTI). Despite their significance for microbial control, the evolution of PTI responses remains largely uncharacteri
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fa780ef9444f71ce8977a1c1f63d0855
https://doi.org/10.1093/plcell/koab073
https://doi.org/10.1093/plcell/koab073
Autor:
Kenichi Tsuda, Thomas M. Winkelmüller, Paweł Krajewski, Ruben Garrido-Oter, Miltos Tsiantis, Anna Piasecka, Baoxing Song, Paweł Bednarek, Aneta Sawikowska, Kenji Fukushima, Karolina Kułak, Shajahan Anver, Frederickson Entila, Eik Dahms, Hitoshi Sakakibara, Stefan Laurent, Paul Schulze-Lefert, Xiangchao Gan
Plants recognize surrounding microbes by sensing microbe-associated molecular patterns (MAMPs) to activate pattern-triggered immunity (PTI). Despite their significance for microbial control, the evolution of PTI responses remains largely uncharacteri
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3a71cdb0a56b8ed6a961b69bd6009eeb
https://doi.org/10.1101/2020.07.29.227397
https://doi.org/10.1101/2020.07.29.227397
Autor:
Alexander Sczyrba, Peter Hofmann, Peter Belmann, David Koslicki, Stefan Janssen, Johannes Dröge, Ivan Gregor, Stephan Majda, Jessika Fiedler, Eik Dahms, Andreas Bremges, Adrian Fritz, Ruben Garrido-Oter, Tue Sparholt Jørgensen, Nicole Shapiro, Philip D. Blood, Alexey Gurevich, Yang Bai, Dmitrij Turaev, Matthew Z. DeMaere, Rayan Chikhi, Niranjan Nagarajan, Christopher Quince, Fernando Meyer, Monika Balvoit, Lars Hestbjerg Hansen, Søren J. Sørensen, Burton K. H. Chia, Bertrand Denis, Jeff L. Froula, Zhong Wang, Robert Egan, Dongwan Don Kang, Jeffrey J. Cook, Charles Deltel, Michael Beckstette, Claire Lemaitre, Pierre Peterlongo, Guillaume Rizk, Dominique Lavenier, Yu-Wei Wu, Steven W. Singer, Chirag Jain, Marc Strous, Heiner Klingenberg, Peter Meinicke, Michael Barton, Thomas Lingner, Hsin-Hung Lin, Yu-Chieh Liao, Genivaldo Gueiros Z. Silva, Daniel A. Cuevas, Robert A. Edwards, Surya Saha, Vitor C. Piro, Bernhard Y. Renard, Mihai Pop, Hans-Peter Klenk, Markus Göker, Nikos C. Kyrpides, Tanja Woyke, Julia A. Vorholt, Paul Schulze-Lefert, Edward M. Rubin, Aaron E. Darling, Thomas Rattei, Alice C. McHardy
Publikováno v:
Nature Methods
Nature Methods, 2017, 14 (11), pp.1063-1071. ⟨10.1038/nmeth.4458⟩
Nature Methods, Nature Publishing Group, 2017, 14 (11), pp.1063-1071. ⟨10.1038/nmeth.4458⟩
Sczyrba, A, Hofmann, P, Belmann, P, Koslicki, D, Janssen, S, Droege, J, Gregor, I, Majda, S, Fiedler, J, Dahms, E, Bremges, A, Fritz, A, Garrido-Oter, R, Jorgensen, T S, Shapiro, N, Blood, P D, Gurevich, A, Bai, Y, Turaev, D, DeMaere, M Z, Chikhi, R, Nagarajan, N, Quince, C, Hansen, L H, Sorensen, S J, Chia, B KH, Denis, B, Froula, J L, Wang, Z L, Egan, R, Kang, D D, Cook, J J, Deltel, C, Beckstette, M, Lemaitre, C, Peterlongo, P, Rizk, G, Lavenier, D, Wu, Y-W, Singer, S W, Jain, C, Strous, M, Klingenberg, H, Meinicke, P, Barton, M, Lingner, T, Lin, H-H, Liao, Y-C, Silva, G G Z, Cuevas, D A, Edwards, R A, Saha, S, Piro, V C, Renard, B Y, Pop, M, Klenk, H-P, Goeker, M, Kyrpides, N, Woyke, T, Vorholt, J A, Schulze-Lefert, P, Rubin, E M, Darling, A E, Rattei, T & McHardy, A C 2017, ' Critical Assessment of Metagenome Interpretation− a benchmark of computational metagenomics software ', bioRxiv, pp. 99127 . https://doi.org/10.1101/099127
Nature Methods, 2017, 14 (11), pp.1063-1071. ⟨10.1038/nmeth.4458⟩
Nature Methods, Nature Publishing Group, 2017, 14 (11), pp.1063-1071. ⟨10.1038/nmeth.4458⟩
Sczyrba, A, Hofmann, P, Belmann, P, Koslicki, D, Janssen, S, Droege, J, Gregor, I, Majda, S, Fiedler, J, Dahms, E, Bremges, A, Fritz, A, Garrido-Oter, R, Jorgensen, T S, Shapiro, N, Blood, P D, Gurevich, A, Bai, Y, Turaev, D, DeMaere, M Z, Chikhi, R, Nagarajan, N, Quince, C, Hansen, L H, Sorensen, S J, Chia, B KH, Denis, B, Froula, J L, Wang, Z L, Egan, R, Kang, D D, Cook, J J, Deltel, C, Beckstette, M, Lemaitre, C, Peterlongo, P, Rizk, G, Lavenier, D, Wu, Y-W, Singer, S W, Jain, C, Strous, M, Klingenberg, H, Meinicke, P, Barton, M, Lingner, T, Lin, H-H, Liao, Y-C, Silva, G G Z, Cuevas, D A, Edwards, R A, Saha, S, Piro, V C, Renard, B Y, Pop, M, Klenk, H-P, Goeker, M, Kyrpides, N, Woyke, T, Vorholt, J A, Schulze-Lefert, P, Rubin, E M, Darling, A E, Rattei, T & McHardy, A C 2017, ' Critical Assessment of Metagenome Interpretation− a benchmark of computational metagenomics software ', bioRxiv, pp. 99127 . https://doi.org/10.1101/099127
In metagenome analysis, computational methods for assembly, taxonomic profiling and binning are key components facilitating downstream biological data interpretation. However, a lack of consensus about benchmarking datasets and evaluation metrics com
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5b973ea1c302f40d8f61a7de08a748e8
https://hal.science/hal-01633525
https://hal.science/hal-01633525