Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus.

Autor: Andersen KG; FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute, Cambridge, MA 02142, USA; The Scripps Research Institute, Scripps Translational Science Institute, La Jolla, CA 92037, USA. Electronic address: andersen@scripps.edu., Shapiro BJ; FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute, Cambridge, MA 02142, USA; Department of Biological Sciences, University of Montréal, Montréal, QC H2V 2S9, Canada., Matranga CB; Broad Institute, Cambridge, MA 02142, USA., Sealfon R; Broad Institute, Cambridge, MA 02142, USA; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Lin AE; FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute, Cambridge, MA 02142, USA., Moses LM; Tulane Health Sciences Center, Tulane University, New Orleans, LA 70118, USA., Folarin OA; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Edo State, Nigeria; Department of Biological Sciences, College of Natural Sciences, Redeemer's University, Redemption City, Osun State, Nigeria., Goba A; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone., Odia I; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Edo State, Nigeria., Ehiane PE; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Edo State, Nigeria., Momoh M; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone; Eastern Polytechnic College, Kenema, Eastern Province, Sierra Leone., England EM; Broad Institute, Cambridge, MA 02142, USA., Winnicki S; FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute, Cambridge, MA 02142, USA., Branco LM; Zalgen Labs, Germantown, MD 20876, USA., Gire SK; FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute, Cambridge, MA 02142, USA., Phelan E; Broad Institute, Cambridge, MA 02142, USA., Tariyal R; Broad Institute, Cambridge, MA 02142, USA., Tewhey R; FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute, Cambridge, MA 02142, USA., Omoniwa O; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Edo State, Nigeria., Fullah M; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone; Eastern Polytechnic College, Kenema, Eastern Province, Sierra Leone., Fonnie R; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone., Fonnie M; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone., Kanneh L; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone., Jalloh S; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone., Gbakie M; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone., Saffa S; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone., Karbo K; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone., Gladden AD; Broad Institute, Cambridge, MA 02142, USA., Qu J; Broad Institute, Cambridge, MA 02142, USA., Stremlau M; FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute, Cambridge, MA 02142, USA., Nekoui M; FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute, Cambridge, MA 02142, USA., Finucane HK; Broad Institute, Cambridge, MA 02142, USA., Tabrizi S; FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute, Cambridge, MA 02142, USA., Vitti JJ; FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA., Birren B; Broad Institute, Cambridge, MA 02142, USA., Fitzgerald M; Broad Institute, Cambridge, MA 02142, USA., McCowan C; Broad Institute, Cambridge, MA 02142, USA., Ireland A; Broad Institute, Cambridge, MA 02142, USA., Berlin AM; Broad Institute, Cambridge, MA 02142, USA., Bochicchio J; Broad Institute, Cambridge, MA 02142, USA., Tazon-Vega B; Broad Institute, Cambridge, MA 02142, USA., Lennon NJ; Broad Institute, Cambridge, MA 02142, USA., Ryan EM; Broad Institute, Cambridge, MA 02142, USA., Bjornson Z; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94304, USA., Milner DA Jr; Department of Immunology and Infectious Disease, Harvard School of Public Health, Boston, MA 02115, USA., Lukens AK; Department of Immunology and Infectious Disease, Harvard School of Public Health, Boston, MA 02115, USA., Broodie N; College of Medicine, Columbia University, New York, NY 10032, USA., Rowland M; Zalgen Labs, Germantown, MD 20876, USA., Heinrich M; Zalgen Labs, Germantown, MD 20876, USA., Akdag M; Zalgen Labs, Germantown, MD 20876, USA., Schieffelin JS; Tulane Health Sciences Center, Tulane University, New Orleans, LA 70118, USA., Levy D; Tulane Health Sciences Center, Tulane University, New Orleans, LA 70118, USA., Akpan H; Nigerian Federal Ministry of Health, Abuja, Federal Capital Territory, Nigeria., Bausch DG; Tulane Health Sciences Center, Tulane University, New Orleans, LA 70118, USA., Rubins K; The National Aeronautics and Space Administration, Johnson Space Center, Houston, TX 77058, USA., McCormick JB; The University of Texas School of Public Health, Brownsville, TX 77030, USA., Lander ES; Broad Institute, Cambridge, MA 02142, USA., Günther S; Department of Virology, Bernhard-Nocht-Institute for Tropical Medicine, 20259 Hamburg, Germany., Hensley L; NIAID Integrated Research Facility, Frederick, MD 21702, USA., Okogbenin S; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Edo State, Nigeria., Schaffner SF; Broad Institute, Cambridge, MA 02142, USA., Okokhere PO; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Edo State, Nigeria., Khan SH; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone., Grant DS; Lassa Fever Laboratory, Kenema Government Hospital, Kenema, Eastern Province, Sierra Leone., Akpede GO; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Edo State, Nigeria., Asogun DA; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Edo State, Nigeria., Gnirke A; Broad Institute, Cambridge, MA 02142, USA., Levin JZ; Broad Institute, Cambridge, MA 02142, USA., Happi CT; Institute of Lassa Fever Research and Control, Irrua Specialist Teaching Hospital, Irrua, Edo State, Nigeria; Department of Biological Sciences, College of Natural Sciences, Redeemer's University, Redemption City, Osun State, Nigeria. Electronic address: happic@run.edu.ng., Garry RF; Tulane Health Sciences Center, Tulane University, New Orleans, LA 70118, USA., Sabeti PC; FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute, Cambridge, MA 02142, USA; Department of Immunology and Infectious Disease, Harvard School of Public Health, Boston, MA 02115, USA. Electronic address: psabeti@oeb.harvard.edu.

Publikováno v: Cell [Cell] 2015 Aug 13; Vol. 162 (4), pp. 738-50.

Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples.

Autor: Matranga CB, Andersen KG, Winnicki S, Busby M, Gladden AD, Tewhey R, Stremlau M, Berlin A, Gire SK, England E, Moses LM, Mikkelsen TS, Odia I, Ehiane PE, Folarin O, Goba A, Kahn SH, Grant DS, Honko A, Hensley L, Happi C, Garry RF, Malboeuf CM, Birren BW, Gnirke A, Levin JZ, Sabeti PC

Publikováno v: Genome biology [Genome Biol] 2014; Vol. 15 (11), pp. 519.