An optimized chromatin immunoprecipitation protocol using Staph-seq for analyzing genome-wide protein-DNA interactions

Autor: Fang Tao, Egidy Rhonda, Xi He, John M. Perry, Linheng Li

Publikováno v: STAR Protocols, Vol 3, Iss 4, Pp 101918- (2022)

Summary: Genome-wide mapping of transcription factors (TFs) is critical to understand their functions. In chromatin immunoprecipitation (ChIP)-seq assay, it’s challenging to study recruitment of low-abundant TFs transiently boud to the genome. Here

Externí odkaz: https://doaj.org/article/42c260d40ab4412a98ae11e206d6fa94

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Human Family with Sequence Similarity 60 Member A (FAM60A) Protein: a New Subunit of the Sin3 Deacetylase Complex

Autor: Smith, Karen T. ^‡, Sardiu, Mihaela E. ^‡, Martin-Brown, Skylar A. ^{‡, ‖}, Seidel, Chris ^‡, Mushegian, Arcady ^{‡, §}, Egidy, Rhonda ^‡, Florens, Laurence ^‡, Washburn, Michael P. ^{‡, ¶}, Workman, Jerry L. ^{‡, **}

Publikováno v: In Molecular & Cellular Proteomics December 2012 11(12):1815-1828

Frizzled5 controls murine intestinal epithelial cell plasticity through organization of chromatin accessibility.

Autor: Deng L; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., He XC; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Chen S; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Zhang N; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Deng F; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Scott A; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., He Y; Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA., Tsuchiya D; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Smith SE; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Epp M; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Malloy S; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Liu F; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Hembree M; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Mu Q; Department of Medicine, Stanford University, Stanford, CA 94305, USA., Haug JS; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Malagola E; Division of Digestive and Liver Diseases, Department of Medicine, Columbia University, College of Physicians and Surgeons, New York, NY 10032, USA., Hassan H; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Petentler K; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Egidy R; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Maddera L; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Russell J; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Wang Y; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Li H; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Zhao C; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Perera A; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Wang TC; Division of Digestive and Liver Diseases, Department of Medicine, Columbia University, College of Physicians and Surgeons, New York, NY 10032, USA., Kuo CJ; Department of Medicine, Stanford University, Stanford, CA 94305, USA., Li L; Stowers Institute for Medical Research, Kansas City, MO 64110, USA; Department of Pathology and Laboratory Medicine and Division of Medical Oncology, Internal Medicine, University of Kansas Medical Center, Kansas City, KS 66160, USA. Electronic address: lil@stowers.org.

Publikováno v: Developmental cell [Dev Cell] 2024 Nov 15. Date of Electronic Publication: 2024 Nov 15.