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pro vyhledávání: '"Edwards, Stefan McKinnon"'
Autor:
Friedrich, Juliane, Antolin, Roberto, Edwards, Stefan McKinnon, Sanchez Molano, Enrique, Haskell, M. J., Hickey, John, Wiener, Pamela
Publikováno v:
Friedrich, J, Antolin, R, Edwards, S M, Sanchez Molano, E, Haskell, M J, Hickey, J & Wiener, P 2018, ' Accuracy of genotype imputation in Labrador Retrievers ', Animal Genetics, vol. 49, no. 4, pp. 303-311 . https://doi.org/10.1111/age.12677
The dog is a valuable model species for the genetic analysis of complex traits and the use of genotype imputation in dogs will be an important tool for future studies. It is of particular interest to analyse the effect of factors like single nucleoti
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https://explore.openaire.eu/search/publication?articleId=od______3094::4d9cc5b2ccc16329fbc3b5d9e4e013a4
https://www.pure.ed.ac.uk/ws/files/65085295/Friedrich_et_al_2018_Animal_Genetics.pdf
https://www.pure.ed.ac.uk/ws/files/65085295/Friedrich_et_al_2018_Animal_Genetics.pdf
Akademický článek
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Autor:
Edwards, Stefan McKinnon
BackgroundThe reported R-package provides an easy way for executing and evaluating genotype imputation studies, by providing functions for preparing input files for AlphaImpute and efficiently calculating imputation accuracies. Using the correlation
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d1f1bc146a0b81f2559552485a6c986a
https://doi.org/10.1101/236760
https://doi.org/10.1101/236760
Autor:
Tsai, Hsin Y, Matika, Oswald, Edwards, Stefan McKinnon, Antolin-Sanchez, Roberto, Hamilton, Alastair, Guy, Derrick R, Tinch, Alan E, Gharbi, Karim, Stear, Michael, Taggart, John, Bron, James, Hickey, John M, Houston, Ross D
Publikováno v:
Tsai, H-Y, Matika, O, Hoj-Edwards, S, Antolin, R, Hamilton, A, Guy, D R, Tinch, A E, Gharbi, K, Stear, M J, Taggart, J B, Bron, J E, Hickey, J M & Houston, R D 2017, ' Genotype Imputation to Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon ', G3: Genes | Genomes | Genetics, vol. 7, no. 4, pp. 1377-1383 . https://doi.org/10.1534/g3.117.040717
G3: Genes|Genomes|Genetics
G3: Genes, Genomes, Genetics, Vol 7, Iss 4, Pp 1377-1383 (2017)
G3: Genes|Genomes|Genetics
G3: Genes, Genomes, Genetics, Vol 7, Iss 4, Pp 1377-1383 (2017)
Genomic selection uses genome-wide marker information to predict breeding values for traits of economic interest, and is more accurate than pedigree-based methods. The development of high density SNP arrays for Atlantic salmon has enabled genomic sel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1d2842866144f359ec1e90569913fb33
https://www.pure.ed.ac.uk/ws/files/34167473/1377.full.pdf
https://www.pure.ed.ac.uk/ws/files/34167473/1377.full.pdf
Autor:
Edwards, Stefan McKinnon
Publikováno v:
Edwards, S M 2014, Improving biological understanding and complex trait prediction by integrating prior information in genomic feature models. Aarhus University, Faculty of Science and Technology .
In this thesis we investigate an approach to integrate external data into the analysis of genetic variants. The goal is similar to that of gene-set enrichment tests, but relies on the robust statistical framework of linear mixed models. This approach
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::4611bb58a701c65d1abddf685d926f34
https://pure.au.dk/portal/da/publications/improving-biological-understanding-and-complex-trait-prediction-by-integrating-prior-information-in-genomic-feature-models(330d23de-89ed-4d97-b8cc-d2df3ec7fc28).html
https://pure.au.dk/portal/da/publications/improving-biological-understanding-and-complex-trait-prediction-by-integrating-prior-information-in-genomic-feature-models(330d23de-89ed-4d97-b8cc-d2df3ec7fc28).html
Publikováno v:
Edwards, S M, Janss, L, Madsen, P & Sørensen, P 2013, ' Partitioning of genomic variance using prior biological information ' 64th Annual Meeting of the European Federation of Anmal Science, Nantes, France, 26/08/2013-30/09/2013, .
Edwards, S M, Janss, L, Madsen, P & Sørensen, P 2013, Partitioning of genomic variance using prior biological information . in Book of Abstracts of the 64th Annual Meeting of the European Association for Animal Production . 2013 edn, vol. 19, Wageningen Academic Publishers, The Netherland, pp. 539, 64th Annual Meeting of the European Federation of Anmal Science, Nantes, France, 26/08/2013 .
Edwards, S M, Janss, L, Madsen, P & Sørensen, P 2013, Partitioning of genomic variance using prior biological information . in Book of Abstracts of the 64th Annual Meeting of the European Association for Animal Production . 2013 edn, vol. 19, Wageningen Academic Publishers, The Netherland, pp. 539, 64th Annual Meeting of the European Federation of Anmal Science, Nantes, France, 26/08/2013 .
Most complex diseases such as susceptibility to mammary gland infections (mastitis) have a complex inheritance and may result from variants in many genes, each contributing only a small effect to the trait. Genome-wide association studies have succes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::284d4d33522cd763aab96d5585b2eab5
https://pure.au.dk/portal/da/publications/partitioning-of-genomic-variance-using-prior-biological-information(d6b3e93f-6165-4fcd-9a09-2b2260878303).html
https://pure.au.dk/portal/da/publications/partitioning-of-genomic-variance-using-prior-biological-information(d6b3e93f-6165-4fcd-9a09-2b2260878303).html
Publikováno v:
Edwards, S M, Janss, L, Madsen, P & Sørensen, P 2013, ' Partitioning of genomic variance using biological pathways ' Joint 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 12th European Conference on Computational Biology (ECCB) 2013, Berlin, Germany, 19/07/2013-23/07/2013, .
Most complex diseases, such as susceptibility to mastitis, have a complex inheritance and may result from variants in many genes, each contributing only a small effect to the trait. Genome-wide association studies have successfully identified numerou
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pure_au_____::66947ef930c21b12ca05d248df2615e9
https://pure.au.dk/portal/da/publications/partitioning-of-genomic-variance-using-biological-pathways(9947b135-cf75-4f06-bb82-e36750a63187).html
https://pure.au.dk/portal/da/publications/partitioning-of-genomic-variance-using-biological-pathways(9947b135-cf75-4f06-bb82-e36750a63187).html
Publikováno v:
Høj-Edwards, S M, Jiang, L, Madsen, P & Sørensen, P 2012, ' Using Kegg Pathways and Expression Studies and Stuff for Genomic Partitioning ' 4th International Conference on Quantitative Genetics, Edinburgh, United Kingdom, 17/06/2012-22/06/2012, .
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::f9c1d753fd25c948e28cfdd0f9fb6252
https://pure.au.dk/portal/da/publications/using-kegg-pathways-and-expression-studies-and-stuff-for-genomic-partitioning(746b3582-85ba-45f7-8d8f-9081c3c608ed).html
https://pure.au.dk/portal/da/publications/using-kegg-pathways-and-expression-studies-and-stuff-for-genomic-partitioning(746b3582-85ba-45f7-8d8f-9081c3c608ed).html
Autor:
Jiang, Li, Janss, Luc, Høj-Edwards, Stefan McKinnon, Skarman, Axel, Thomsen, Bo, Sørensen, Peter
Publikováno v:
Jiang, L, Janss, L, Høj-Edwards, S M, Skarman, A, Thomsen, B & Sørensen, P 2012, Gene prioritization by data integration . in Programme & Book of Abstracts, ICQG2012 . Edinburgh, pp. 87-88, 4th International Conference on Quantitative Genetics, Edinburgh, United Kingdom, 17/06/2012 .
Jiang, L, Janss, L, Høj-Edwards, S M, Skarman, A, Thomsen, B & Sørensen, P 2012, ' Gene prioritization by data integration ' 4th International Conference on Quantitative Genetics, Edinburgh, United Kingdom, 17/06/2012-22/06/2012, .
Jiang, L, Janss, L, Høj-Edwards, S M, Skarman, A, Thomsen, B & Sørensen, P 2012, ' Gene prioritization by data integration ' 4th International Conference on Quantitative Genetics, Edinburgh, United Kingdom, 17/06/2012-22/06/2012, .
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::58909da33631f18dfbd3faaafbb7664c
https://pure.au.dk/ws/files/46022904/ICQG_LiJiang_0159.pdf
https://pure.au.dk/ws/files/46022904/ICQG_LiJiang_0159.pdf
Autor:
Høj-Edwards, Stefan McKinnon, Skarman, Axel, Jiang, Li, Madsen, Per, Su, Guosheng, Sørensen, Peter
Publikováno v:
Høj-Edwards, S M, Skarman, A, Jiang, L, Madsen, P, Su, G & Sørensen, P 2011, ' Using KEGG pathway information for genomic partitioning ' Functional Genomics and Systems Biology 2011, Hinxton, Cambridge, UK, United Kingdom, 29/11/2011-01/12/2011, .
Edwards, S M, Skarman, A, Jiang, L, Madsen, P, Su, G & Sørensen, P 2012, Using KEGG pathway information for genomic partitioning . in MBG Annual PhD-days 2012 . Aarhus University, pp. 18-18, MBG Annual PhD-Days 2012, Sandbjerg, Denmark, 23/01/2012 .
Edwards, S M, Skarman, A, Jiang, L, Madsen, P, Su, G & Sørensen, P 2012, Using KEGG pathway information for genomic partitioning . in MBG Annual PhD-days 2012 . Aarhus University, pp. 18-18, MBG Annual PhD-Days 2012, Sandbjerg, Denmark, 23/01/2012 .
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::42157ba4710f3d459c23c5d39470ae29
https://pure.au.dk/ws/files/43966677/Poster3_A0.pdf
https://pure.au.dk/ws/files/43966677/Poster3_A0.pdf