Zobrazeno 1 - 10
of 238
pro vyhledávání: '"Eduardo P C, Rocha"'
Autor:
Lingchen He, Laura Miguel-Romero, Jonasz B. Patkowski, Nasser Alqurainy, Eduardo P. C. Rocha, Tiago R. D. Costa, Alfred Fillol-Salom, José R. Penadés
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-16 (2024)
Abstract Many bacterial immune systems recognize phage structural components to activate antiviral responses, without inhibiting the function of the phage component. These systems can be encoded in specific chromosomal loci, known as defense islands,
Externí odkaz:
https://doaj.org/article/b98ef47ae13041da90e6cd058eed4d51
Autor:
Camille d’Humières, Margot Delavy, Laurie Alla, Farid Ichou, Emilie Gauliard, Amine Ghozlane, Florence Levenez, Nathalie Galleron, Benoit Quinquis, Nicolas Pons, Jimmy Mullaert, Antoine Bridier-Nahmias, Bénédicte Condamine, Marie Touchon, Dominique Rainteau, Antonin Lamazière, Philippe Lesnik, Maharajah Ponnaiah, Marie Lhomme, Natacha Sertour, Savannah Devente, Jean-Denis Docquier, Marie-Elisabeth Bougnoux, Olivier Tenaillon, Mélanie Magnan, Etienne Ruppé, Nathalie Grall, Xavier Duval, Dusko Ehrlich, France Mentré, Erick Denamur, Eduardo P. C. Rocha, Emmanuelle Le Chatelier, Charles Burdet, for the PrediRes study group
Publikováno v:
Microbiome, Vol 12, Iss 1, Pp 1-19 (2024)
Abstract Background Antibiotics notoriously perturb the gut microbiota. We treated healthy volunteers either with cefotaxime or ceftriaxone for 3 days, and collected in each subject 12 faecal samples up to day 90. Using untargeted and targeted phenot
Externí odkaz:
https://doaj.org/article/868dc641a38f41ccb98c0e6e9993a156
Autor:
Matthieu Haudiquet, Julie Le Bris, Amandine Nucci, Rémy A. Bonnin, Pilar Domingo-Calap, Eduardo P. C. Rocha, Olaya Rendueles
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-16 (2024)
Abstract Bacterial evolution is affected by mobile genetic elements like phages and conjugative plasmids, offering new adaptive traits while incurring fitness costs. Their infection is affected by the bacterial capsule. Yet, its importance has been d
Externí odkaz:
https://doaj.org/article/0c0af7fa625a40488ebb88452df90aa0
Autor:
Eugen Pfeifer, Eduardo P. C. Rocha
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)
Abstract Phages and plasmids are regarded as distinct types of mobile genetic elements that drive bacterial evolution by horizontal gene transfer. However, the distinction between both types is blurred by the existence of elements known as prophage-p
Externí odkaz:
https://doaj.org/article/2f98e565bd714613be8d5f12075bf3e5
Autor:
Maxime Godfroid, Charles Coluzzi, Amaury Lambert, Philippe Glaser, Eduardo P. C. Rocha, Guillaume Achaz
Publikováno v:
Methods in Ecology and Evolution, Vol 15, Iss 2, Pp 282-289 (2024)
Abstract Correlated evolution describes how multiple biological traits evolve together. Recently developed methods provide increasingly detailed results of correlated evolution, sometimes at elevated computational costs. Here, we present evo‐scope,
Externí odkaz:
https://doaj.org/article/aaf2f7c6c20d4a828a8eb2cd1f9de38c
Autor:
Rubén Barcia-Cruz, David Goudenège, Jorge A. Moura de Sousa, Damien Piel, Martial Marbouty, Eduardo P. C. Rocha, Frédérique Le Roux
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)
Abstract Phage satellites are bacterial genetic elements that co-opt phage machinery for their own dissemination. Here we identify a family of satellites, named Phage-Inducible Chromosomal Minimalist Islands (PICMIs), that are broadly distributed in
Externí odkaz:
https://doaj.org/article/847e2ff338e240dda1158faf1f5ade23
Autor:
Thibault R. Bongiovanni, Casey J. Latario, Youn Le Cras, Evan Trus, Sophie Robitaille, Kerry Swartz, Danica Schmidtke, Maxence Vincent, Artemis Kosta, Jan Orth, Florian Stengel, Riccardo Pellarin, Eduardo P. C. Rocha, Benjamin D. Ross, Eric Durand
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-16 (2024)
Abstract The type VI secretion system (T6SS) of Gram-negative bacteria inhibits competitor cells through contact-dependent translocation of toxic effector proteins. In Proteobacteria, the T6SS is anchored to the cell envelope through a megadalton-siz
Externí odkaz:
https://doaj.org/article/2322a7da5bcf4770b7fbe860aac6d7f8
Autor:
Bogna J. Smug, Krzysztof Szczepaniak, Eduardo P. C. Rocha, Stanislaw Dunin-Horkawicz, Rafał J. Mostowy
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-16 (2023)
Abstract Biological modularity enhances evolutionary adaptability. This principle is vividly exemplified by bacterial viruses (phages), which display extensive genomic modularity. Phage genomes are composed of independent functional modules that evol
Externí odkaz:
https://doaj.org/article/5068c4c8b2be404a9f83fdbedba9d50e
Publikováno v:
npj Biofilms and Microbiomes, Vol 9, Iss 1, Pp 1-12 (2023)
Abstract Adaptation to one environment can often generate phenotypic and genotypic changes which impact the future ability of an organism to thrive in other environmental conditions. In the context of host-microbe interactions, biofilm formation can
Externí odkaz:
https://doaj.org/article/1a4450be8bca44f59154a68a1f438aab
Autor:
Egill Richard, Baptiste Darracq, Eloi Littner, Gael A Millot, Valentin Conte, Thomas Cokelaer, Jan Engelstädter, Eduardo P C Rocha, Didier Mazel, Céline Loot
Publikováno v:
PLoS Genetics, Vol 20, Iss 4, p e1011231 (2024)
Integrons are adaptive devices that capture, stockpile, shuffle and express gene cassettes thereby sampling combinatorial phenotypic diversity. Some integrons called sedentary chromosomal integrons (SCIs) can be massive structures containing hundreds
Externí odkaz:
https://doaj.org/article/7858995495e6436592d51e1f865adab5