Norrie disease protein is essential for cochlear hair cell maturation

Autor: Hayashi, Yushi, Chiang, Hao, Tian, ChunJie, Indzhykulian, Artur A., Edge, Albert S. B.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America, 2021 Sep . 118(39), 1-12.

Externí odkaz: https://www.jstor.org/stable/27075870

Auditory hair cells and spiral ganglion neurons regenerate synapses with refined release properties in vitro.

Autor: Vincent, Philippe F. Y., Young, Eric D., Edge, Albert S. B., Glowatzki, Elisabeth

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America; 7/30/2024, Vol. 121 Issue 31, p1-12, 28p

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Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Autor: Grapotte M., Saraswat M., Bessiere C., Menichelli C., Ramilowski J. A., Severin J., Hayashizaki Y., Itoh M., Tagami M., Murata M., Kojima-Ishiyama M., Noma S., Noguchi S., Kasukawa T., Hasegawa A., Suzuki H., Nishiyori-Sueki H., Frith M. C., Abugessaisa I., Aitken S., Aken B. L., Alam I., Alam T., Alasiri R., Alhendi A. M. N., Alinejad-Rokny H., Alvarez M. J., Andersson R., Arakawa T., Araki M., Arbel T., Archer J., Archibald A. L., Arner E., Arner P., Asai K., Ashoor H., Astrom G., Babina M., Baillie J. K., Bajic V. B., Bajpai A., Baker S., Baldarelli R. M., Balic A., Bansal M., Batagov A. O., Batzoglou S., Beckhouse A. G., Beltrami A. P., Beltrami C. A., Bertin N., Bhattacharya S., Bickel P. J., Blake J. A., Blanchette M., Bodega B., Bonetti A., Bono H., Bornholdt J., Bttcher M., Bougouffa S., Boyd M., Breda J., Brombacher F., Brown J. B., Bult C. J., Burroughs A. M., Burt D. W., Busch A., Caglio G., Califano A., Cameron C. J., Cannistraci C. V., Carbone A., Carlisle A. J., Carninci P., Carter K. W., Cesselli D., Chang J. -C., Chen J. C., Chen Y., Chierici M., Christodoulou J., Ciani Y., Clark E. L., Coskun M., Dalby M., Dalla E., Daub C. O., Davis C. A., de Hoon M. J. L., de Rie D., Denisenko E., Deplancke B., Detmar M., Deviatiiarov R., Di Bernardo D., Diehl A. D., Dieterich L. C., Dimont E., Djebali S., Dohi T., Dostie J., Drablos F., Edge A. S. B., Edinger M., Ehrlund A., Ekwall K., Elofsson A., Endoh M., Enomoto H., Enomoto S., Faghihi M., Fagiolini M., Farach-Carson M. C., Faulkner G. J., Favorov A., Fernandes A. M., Ferrai C., Forrest A. R. R., Forrester L. M., Forsberg M., Fort A., Francescatto M., Freeman T. C., Frith M., Fukuda S., Funayama M., Furlanello C., Furuno M., Furusawa C., Gao H., Gazova I., Gebhard C., Geier F., Geijtenbeek T. B. H., Ghosh S., Ghosheh Y., Gingeras T. R., Gojobori T., Goldberg T., Goldowitz D., Gough J., Greco D., Gruber A. J., Guhl S., Guigo R., Guler R., Gusev O., Gustincich S., Ha T. J., Haberle V., Hale P., Hallstrom B. M., Hamada M., Handoko L., Hara M., Harbers M., Harrow J., Harshbarger J., Hase T., Hashimoto K., Hatano T., Hattori N., Hayashi R., Herlyn M., Hettne K., Heutink P., Hide W., Hitchens K. J., Sui S. H., 't Hoen P. A. C., Hon C. C., Hori F., Horie M., Horimoto K., Horton P., Hou R., Huang E., Huang Y., Hugues R., Hume D., Ienasescu H., Iida K., Ikawa T., Ikemura T., Ikeo K., Inoue N., Ishizu Y., Ito Y., Ivshina A. V., Jankovic B. R., Jenjaroenpun P., Johnson R., Jorgensen M., Jorjani H., Joshi A., Jurman G., Kaczkowski B., Kai C., Kaida K., Kajiyama K., Kaliyaperumal R., Kaminuma E., Kanaya T., Kaneda H., Kapranov P., Kasianov A. S., Katayama T., Kato S., Kawaguchi S., Kawai J., Kawaji H., Kawamoto H., Kawamura Y. I., Kawasaki S., Kawashima T., Kempfle J. S., Kenna T. J., Kere J., Khachigian L., Kiryu H., Kishima M., Kitajima H., Kitamura T., Kitano H., Klaric E., Klepper K., Klinken S. P., Kloppmann E., Knox A. J., Kodama Y., Kogo Y., Kojima M., Kojima S., Komatsu N., Komiyama H., Kono T., Koseki H., Koyasu S., Kratz A., Kukalev A., Kulakovskiy I., Kundaje A., Kunikata H., Kuo R., Kuo T., Kuraku S., Kuznetsov V. A., Kwon T. J., Larouche M., Lassmann T., Law A., Le-Cao K. -A., Lecellier C. -H., Lee W., Lenhard B., Lennartsson A., Li K., Li R., Lilje B., Lipovich L., Lizio M., Lopez G., Magi S., Mak G. K., Makeev V., Manabe R., Mandai M., Mar J., Maruyama K., Maruyama T., Mason E., Mathelier A., Matsuda H., Medvedeva Y. A., Meehan T. F., Mejhert N., Meynert A., Mikami N., Minoda A., Miura H., Miyagi Y., Miyawaki A., Mizuno Y., Morikawa H., Morimoto M., Morioka M., Morishita S., Moro K., Motakis E., Motohashi H., Mukarram A. K., Mummery C. L., Mungall C. J., Murakawa Y., Muramatsu M., Nagasaka K., Nagase T., Nakachi Y., Nakahara F., Nakai K., Nakamura K., Nakamura Y., Nakazawa T., Nason G. P., Nepal C., Nguyen Q. H., Nielsen L. K., Nishida K., Nishiguchi K. M., Nishiyori H., Nitta K., Notredame C., Ogishima S., Ohkura N., Ohno H., Ohshima M., Ohtsu T., Okada Y., Okada-Hatakeyama M., Okazaki Y., Oksvold P., Orlando V., Ow G. S., Ozturk M., Pachkov M., Paparountas T., Parihar S. P., Park S. -J., Pascarella G., Passier R., Persson H., Philippens I. H., Piazza S., Plessy C., Pombo A., Ponten F., Poulain S., Poulsen T. M., Pradhan S., Prezioso C., Pridans C., Qin X. -Y., Quackenbush J., Rackham O., Ramilowski J., Ravasi T., Rehli M., Rennie S., Rito T., Rizzu P., Robert C., Roos M., Rost B., Roudnicky F., Roy R., Rye M. B., Sachenkova O., Saetrom P., Sai H., Saiki S., Saito M., Saito A., Sakaguchi S., Sakai M., Sakaue S., Sakaue-Sawano A., Sandelin A., Sano H., Sasamoto Y., Sato H., Saxena A., Saya H., Schafferhans A., Schmeier S., Schmidl C., Schmocker D., Schneider C., Schueler M., Schultes E. A., Schulze-Tanzil G., Semple C. A., Seno S., Seo W., Sese J., Sheng G., Shi J., Shimoni Y., Shin J. W., SimonSanchez J., Sivertsson A., Sjostedt E., Soderhall C., Laurent G. S., Stoiber M. H., Sugiyama D., Summers K. M., Suzuki A. M., Suzuki K., Suzuki M., Suzuki N., Suzuki T., Swanson D. J., Swoboda R. K., Taguchi A., Takahashi H., Takahashi M., Takamochi K., Takeda S., Takenaka Y., Tam K. T., Tanaka H., Tanaka R., Tanaka Y., Tang D., Taniuchi I., Tanzer A., Tarui H., Taylor M. S., Terada A., Terao Y., Testa A. C., Thomas M., Thongjuea S., Tomii K., Triglia E. T., Toyoda H., Tsang H. G., Tsujikawa M., Uhlen M., Valen E., van de Wetering M., van Nimwegen E., Velmeshev D., Verardo R., Vitezic M., Vitting-Seerup K., von Feilitzen K., Voolstra C. R., Vorontsov I. E., Wahlestedt C., Wasserman W. W., Watanabe K., Watanabe S., Wells C. A., Winteringham L. N., Wolvetang E., Yabukami H., Yagi K., Yamada T., Yamaguchi Y., Yamamoto M., Yamamoto Y., Yamanaka Y., Yano K., Yasuzawa K., Yatsuka Y., Yo M., Yokokura S., Yoneda M., Yoshida E., Yoshida Y., Yoshihara M., Young R., Young R. S., Yu N. Y., Yumoto N., Zabierowski S. E., Zhang P. G., Zucchelli S., Zwahlen M., Chatelain C., Brehelin L.

Publikováno v: Nature communications, vol 12, iss 1
Nature Communications
Nature Communications, 2021, 12, pp.1-18/3297. ⟨10.1038/s41467-021-23143-7⟩
Nature communications, 12(1):3297. Nature Publishing Group
Nature Communications, Nature Publishing Group, 2021, 12, pp.1-18. ⟨10.1038/s41467-021-23143-7⟩
Nature Communications, Vol 12, Iss 1, Pp 1-18 (2021)
Grapotte, M, Saraswat, M, Bessière, C, Menichelli, C, Ramilowski, J A, Severin, J, Hayashizaki, Y, Itoh, M, Tagami, M, Murata, M, Kojima-Ishiyama, M, Noma, S, Noguchi, S, Kasukawa, T, Hasegawa, A, Suzuki, H, Nishiyori-Sueki, H, Frith, M C, Abugessaisa, I, Aitken, S, Aken, B L, Alam, I, Alam, T, Alasiri, R, Alhendi, A M N, Alinejad-Rokny, H, Alvarez, M J, Andersson, R, Arakawa, T, Araki, M, Arbel, T, Bornholdt, J, Boyd, M, Chen, Y, Coskun, M, Dalby, M, Ienasescu, H, Jørgensen, M, Kaczkowski, B, Kere, J, Li, K, Lilje, B, Nepal, C, Nguyen, Q H, Nielsen, L K, Rennie, S, Sandelin, A, Valen, E, Vitezic, M, Vitting-Seerup, K & FANTOM Consortium 2021, ' Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network ', Nature Communications, vol. 12, 3297 . https://doi.org/10.1038/s41467-021-23143-7
Grapotte, Mathys; Saraswat, Manu; Bessière, Chloé; Menichelli, Christophe; Ramilowski, Jordan A; Severin, Jessica; Hayashizaki, Yoshihide; Itoh, Masayoshi; Tagami, Michihira; Murata, Mitsuyoshi; Kojima-Ishiyama, Miki; Noma, Shohei; Noguchi, Shuhei; Kasukawa, Takeya; Hasegawa, Akira; Suzuki, Harukazu; Nishiyori-Sueki, Hiromi; Frith, Martin C; Chatelain, Clément; Carninci, Piero; ... (2021). Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network. Nature communications, 12(1), p. 3297. Nature Publishing Group 10.1038/s41467-021-23143-7
Grapotte, M, Saraswat, M, Bessière, C, Menichelli, C, Ramilowski, J A, Severin, J, Hayashizaki, Y, Itoh, M, Tagami, M, Murata, M, Kojima-ishiyama, M, Noma, S, Noguchi, S, Kasukawa, T, Hasegawa, A, Suzuki, H, Nishiyori-sueki, H, Frith, M, Abugessaisa, I, Aitken, S, Aken, B L, Alam, I, Alam, T, Alasiri, R, Alhendi, A M N, Alinejad-rokny, H, Alvarez, M J, Andersson, R, Arakawa, T, Araki, M, Arbel, T, Archer, J, Archibald, A L, Arner, E, Arner, P, Asai, K, Ashoor, H, Astrom, G, Babina, M, Baillie, J K, Bajic, V B, Bajpai, A, Baker, S, Baldarelli, R M, Balic, A, Bansal, M, Batagov, A O, Batzoglou, S, Beckhouse, A G, Beltrami, A P, Beltrami, C A, Bertin, N, Bhattacharya, S, Bickel, P J, Blake, J A, Blanchette, M, Bodega, B, Bonetti, A, Bono, H, Bornholdt, J, Bttcher, M, Bougouffa, S, Boyd, M, Breda, J, Brombacher, F, Brown, J B, Bult, C J, Burroughs, A M, Burt, D W, Busch, A, Caglio, G, Califano, A, Cameron, C J, Cannistraci, C V, Carbone, A, Carlisle, A J, Carninci, P, Carter, K W, Cesselli, D, Chang, J, Chen, J C, Chen, Y, Chierici, M, Christodoulou, J, Ciani, Y, Clark, E L, Coskun, M, Dalby, M, Dalla, E, Daub, C O, Davis, C A, De Hoon, M J L, De Rie, D, Denisenko, E, Deplancke, B, Detmar, M, Deviatiiarov, R, Di Bernardo, D, Diehl, A D, Dieterich, L C, Dimont, E, Djebali, S, Dohi, T, Dostie, J, Drablos, F, Edge, A S B, Edinger, M, Ehrlund, A, Ekwall, K, Elofsson, A, Endoh, M, Enomoto, H, Enomoto, S, Faghihi, M, Fagiolini, M, Farach-carson, M C, Faulkner, G J, Favorov, A, Fernandes, A M, Ferrai, C, Forrest, A R R, Forrester, L M, Forsberg, M, Fort, A, Francescatto, M, Freeman, T C, Frith, M, Fukuda, S, Funayama, M, Furlanello, C, Furuno, M, Furusawa, C, Gao, H, Gazova, I, Gebhard, C, Geier, F, Geijtenbeek, T B H, Ghosh, S, Ghosheh, Y, Gingeras, T R, Gojobori, T, Goldberg, T, Goldowitz, D, Gough, J, Greco, D, Gruber, A J, Guhl, S, Guigo, R, Guler, R, Gusev, O, Gustincich, S, Ha, T J, Haberle, V, Hale, P, Hallstrom, B M, Hamada, M, Handoko, L, Hara, M, Harbers, M, Harrow, J, Harshbarger, J, Hase, T, Hasegawa, A, Hashimoto, K, Hatano, T, Hattori, N, Hayashi, R, Hayashizaki, Y, Herlyn, M, Hettne, K, Heutink, P, Hide, W, Hitchens, K J, Sui, S H, ’t Hoen, P A C, Hon, C C, Hori, F, Horie, M, Horimoto, K, Horton, P, Hou, R, Huang, E, Huang, Y, Hugues, R, Hume, D, Ienasescu, H, Iida, K, Ikawa, T, Ikemura, T, Ikeo, K, Inoue, N, Ishizu, Y, Ito, Y, Itoh, M, Ivshina, A V, Jankovic, B R, Jenjaroenpun, P, Johnson, R, Jorgensen, M, Jorjani, H, Joshi, A, Jurman, G, Kaczkowski, B, Kai, C, Kaida, K, Kajiyama, K, Kaliyaperumal, R, Kaminuma, E, Kanaya, T, Kaneda, H, Kapranov, P, Kasianov, A S, Kasukawa, T, Katayama, T, Kato, S, Kawaguchi, S, Kawai, J, Kawaji, H, Kawamoto, H, Kawamura, Y I, Kawasaki, S, Kawashima, T, Kempfle, J S, Kenna, T J, Kere, J, Khachigian, L, Kiryu, H, Kishima, M, Kitajima, H, Kitamura, T, Kitano, H, Klaric, E, Klepper, K, Klinken, S P, Kloppmann, E, Knox, A J, Kodama, Y, Kogo, Y, Kojima, M, Kojima, S, Komatsu, N, Komiyama, H, Kono, T, Koseki, H, Koyasu, S, Kratz, A, Kukalev, A, Kulakovskiy, I, Kundaje, A, Kunikata, H, Kuo, R, Kuo, T, Kuraku, S, Kuznetsov, V A, Kwon, T J, Larouche, M, Lassmann, T, Law, A, Le-cao, K, Lecellier, C, Lee, W, Lenhard, B, Lennartsson, A, Li, K, Li, R, Lilje, B, Lipovich, L, Lizio, M, Lopez, G, Magi, S, Mak, G K, Makeev, V, Manabe, R, Mandai, M, Mar, J, Maruyama, K, Maruyama, T, Mason, E, Mathelier, A, Matsuda, H, Medvedeva, Y A, Meehan, T F, Mejhert, N, Meynert, A, Mikami, N, Minoda, A, Miura, H, Miyagi, Y, Miyawaki, A, Mizuno, Y, Morikawa, H, Morimoto, M, Morioka, M, Morishita, S, Moro, K, Motakis, E, Motohashi, H, Mukarram, A K, Mummery, C L, Mungall, C J, Murakawa, Y, Muramatsu, M, Murata, M, Nagasaka, K, Nagase, T, Nakachi, Y, Nakahara, F, Nakai, K, Nakamura, K, Nakamura, Y, Nakamura, Y, Nakazawa, T, Nason, G P, Nepal, C, Nguyen, Q H, Nielsen, L K, Nishida, K, Nishiguchi, K M, Nishiyori, H, Nitta, K, Noguchi, S, Noma, S, Notredame, C, Ogishima, S, Ohkura, N, Ohno, H, Ohshima, M, Ohtsu, T, Okada, Y, Okada-hatakeyama, M, Okazaki, Y, Oksvold, P, Orlando, V, Ow, G S, Ozturk, M, Pachkov, M, Paparountas, T, Parihar, S P, Park, S, Pascarella, G, Passier, R, Persson, H, Philippens, I H, Piazza, S, Plessy, C, Pombo, A, Ponten, F, Poulain, S, Poulsen, T M, Pradhan, S, Prezioso, C, Pridans, C, Qin, X, Quackenbush, J, Rackham, O, Ramilowski, J, Ravasi, T, Rehli, M, Rennie, S, Rito, T, Rizzu, P, Robert, C, Roos, M, Rost, B, Roudnicky, F, Roy, R, Rye, M B, Sachenkova, O, Saetrom, P, Sai, H, Saiki, S, Saito, M, Saito, A, Sakaguchi, S, Sakai, M, Sakaue, S, Sakaue-sawano, A, Sandelin, A, Sano, H, Sasamoto, Y, Sato, H, Saxena, A, Saya, H, Schafferhans, A, Schmeier, S, Schmidl, C, Schmocker, D, Schneider, C, Schueler, M, Schultes, E A, Schulze-tanzil, G, Semple, C A, Seno, S, Seo, W, Sese, J, Severin, J, Sheng, G, Shi, J, Shimoni, Y, Shin, J W, Simonsanchez, J, Sivertsson, A, Sjostedt, E, Soderhall, C, Laurent, G S, Stoiber, M H, Sugiyama, D, Summers, K M, Suzuki, A M, Suzuki, H, 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W, Bréhélin, L & Lecellier, C 2021, ' Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network ', Nature Communications, vol. 12, no. 1 . https://doi.org/10.1038/s41467-021-23143-7
Nature Communications, Nature Publishing Group, 2021, 12 (1), ⟨10.1038/s41467-021-23143-7⟩
Nature Communications, 12 (1)

Using the Cap Analysis of Gene Expression (CAGE) technology, the FANTOM5 consortium provided one of the most comprehensive maps of transcription start sites (TSSs) in several species. Strikingly, ~72% of them could not be assigned to a specific gene

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::071cc9b35fa8ab5830f24ee8cb404eaf
https://pubmed.ncbi.nlm.nih.gov/35232988

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