Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Dylan R Cronin"'
Autor:
Funing Tian, James M. Wainaina, Cristina Howard-Varona, Guillermo Domínguez-Huerta, Benjamin Bolduc, Maria Consuelo Gazitúa, Garrett Smith, Marissa R. Gittrich, Olivier Zablocki, Dylan R. Cronin, Damien Eveillard, Steven J. Hallam, Matthew B. Sullivan
Publikováno v:
Microbiome, Vol 12, Iss 1, Pp 1-16 (2024)
Abstract Background Prokaryotic microbes have impacted marine biogeochemical cycles for billions of years. Viruses also impact these cycles, through lysis, horizontal gene transfer, and encoding and expressing genes that contribute to metabolic repro
Externí odkaz:
https://doaj.org/article/4d561c9165c14eeb99216a51e82bfeec
Autor:
Joanna Warwick-Dugdale, Funing Tian, Michelle L. Michelsen, Dylan R. Cronin, Karen Moore, Audrey Farbos, Lauren Chittick, Ashley Bell, Ahmed A. Zayed, Holger H. Buchholz, Luis M. Bolanos, Rachel J. Parsons, Michael J. Allen, Matthew B. Sullivan, Ben Temperton
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-15 (2024)
Abstract Dominant microorganisms of the Sargasso Sea are key drivers of the global carbon cycle. However, associated viruses that shape microbial community structure and function are not well characterised. Here, we combined short and long read seque
Externí odkaz:
https://doaj.org/article/dd1b7303da7b433381bb6603f48ef17a
Autor:
Jared B. Ellenbogen, Mikayla A. Borton, Bridget B. McGivern, Dylan R. Cronin, David W. Hoyt, Viviana Freire-Zapata, Carmody K. McCalley, Ruth K. Varner, Patrick M. Crill, Richard A. Wehr, Jeffrey P. Chanton, Ben J. Woodcroft, Malak M. Tfaily, Gene W. Tyson, Virginia I. Rich, Kelly C. Wrighton
Publikováno v:
mSystems, Vol 9, Iss 1 (2024)
ABSTRACTWhile wetlands are major sources of biogenic methane (CH4), our understanding of resident microbial metabolism is incomplete, which compromises the prediction of CH4 emissions under ongoing climate change. Here, we employed genome-resolved mu
Externí odkaz:
https://doaj.org/article/fac55cb46da04ede8c860d03df98d24c
Autor:
Ali Sinan Köksal, Kirsten Beck, Dylan R. Cronin, Aaron McKenna, Nathan D. Camp, Saurabh Srivastava, Matthew E. MacGilvray, Rastislav Bodík, Alejandro Wolf-Yadlin, Ernest Fraenkel, Jasmin Fisher, Anthony Gitter
Publikováno v:
Cell Reports, Vol 24, Iss 13, Pp 3607-3618 (2018)
Summary: We present a method for automatically discovering signaling pathways from time-resolved phosphoproteomic data. The Temporal Pathway Synthesizer (TPS) algorithm uses constraint-solving techniques first developed in the context of formal verif
Externí odkaz:
https://doaj.org/article/48caac5bc5e443d090361032f80a4b17
Autor:
Joanna Warwick-Dugdale, Funing Tian, Michelle Michelsen, Dylan R Cronin, Karen Moore, Audrey Farbos, Lauren Chittick, Ashley Bell, Holger H Buchholz, Rachel J Parsons, Ahmed A Zayed, Michael J Allen, Matthew B Sullivan, Ben Temperton
In the summer months, the waters of the Sargasso Sea are nutrient-limited and strongly stratified, serving as a model system for the predicted warmer and nutrient-limited oceans of the Anthropocene. The dominant microorganisms of surface waters are k
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::83be4c425834deab91d13ac69b6baace
https://doi.org/10.1101/2022.09.19.508504
https://doi.org/10.1101/2022.09.19.508504
Autor:
Lucas Paoli, Hans-Joachim Ruscheweyh, Clarissa C. Forneris, Florian Hubrich, Satria Kautsar, Agneya Bhushan, Alessandro Lotti, Quentin Clayssen, Guillem Salazar, Alessio Milanese, Charlotte I. Carlström, Chrysa Papadopoulou, Daniel Gehrig, Mikhail Karasikov, Harun Mustafa, Martin Larralde, Laura M. Carroll, Pablo Sánchez, Ahmed A. Zayed, Dylan R. Cronin, Silvia G. Acinas, Peer Bork, Chris Bowler, Tom O. Delmont, Josep M. Gasol, Alvar D. Gossert, André Kahles, Matthew B. Sullivan, Patrick Wincker, Georg Zeller, Serina L. Robinson, Jörn Piel, Shinichi Sunagawa
Publikováno v:
Digital.CSIC. Repositorio Institucional del CSIC
instname
Nature, 607(7917), 111-118
Nature
Nature, 607 (7917)
Nature 607 (2022) 7917
instname
Nature, 607(7917), 111-118
Nature
Nature, 607 (7917)
Nature 607 (2022) 7917
8 pages, 4 figures, supplementary information https://doi.org/10.1038/s41586-022-04862-3.-- This Article is contribution number 130 of Tara Oceans
Natural microbial communities are phylogenetically and metabolically diverse. In addition to under
Natural microbial communities are phylogenetically and metabolically diverse. In addition to under
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::06f2f4533523bcd8b38d773d04f8c87b
http://hdl.handle.net/10261/278488
http://hdl.handle.net/10261/278488
Autor:
Quentin Clayssen, Georg Zeller, Martin Larralde, Patrick Wincker, Chris Bowler, Peer Bork, Satria A. Kautsar, Jörn Piel, Serina L. Robinson, Clarissa C. Forneris, Alessio Milanese, Shinichi Sunagawa, Matthew B. Sullivan, Guillem Salazar, Pablo Sánchez, Silvia G. Acinas, Laura M. Carroll, Hans-Joachim Ruscheweyh, Lucas Paoli, Tom O. Delmont, Dylan R. Cronin, Ahmed A. Zayed, Daniel Gehrig
SummaryMicrobes are phylogenetically and metabolically diverse. Yet capturing this diversity, assigning functions to host organisms and exploring the biosynthetic potential in natural environments remains challenging. We reconstructed >25,000 draft g
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d8813d5cd53045e69c399ffdcf421e70
https://doi.org/10.1101/2021.03.24.436479
https://doi.org/10.1101/2021.03.24.436479
Autor:
Ann C. Gregory, Paul D. Piehowski, Matthew B. Sullivan, Ahmed A. Zayed, Dominik Lücking, Katherine R. Hargreaves, Ben Bolduc, Mohamed Mohssen, Joshua N. Adkins, Richard A. White, Eric L. Huang, Cristina Moraru, Dylan R. Cronin, Simon Roux
Publikováno v:
BIOINFORMATICS
Motivation Viruses infect, reprogram and kill microbes, leading to profound ecosystem consequences, from elemental cycling in oceans and soils to microbiome-modulated diseases in plants and animals. Although metagenomic datasets are increasingly avai
Autor:
J. L. DelGreco, J Deng, B Huettel, H Axén, Joachim Jansen, KY Chang, F Li, Bonnie L. Hurwitz, U Karaoz, S. B. Hodgkins, Ahmed A. Zayed, S Dominguez, P Tansey, A Cory, R Braswell, Eleanor E. Campbell, Vining, T Marcus, Paul N. Evans, F. Sullivan, Clarice R. Perryman, Patrick M. Crill, K Solheim, Joanne B. Emerson, B Ziniti, Samantha McCabe, Dylan R. Cronin, K. Crossen, Michael W. Palace, Melissa B. Duhaime, I Morales, Martin Wik, Joel A. Boyd, T. Logan, D Anderson, J Kolengowski, Saleska, Stephen E. Frolking, Eoin L. Brodie, Jessica G. Ernakovich, C. K. McCalley, S. A. Burke, Benjamin Bolduc, C. Herrick, Nathan C. VerBerkmoes, Jeffrey P. Chanton, A. Garnello, K Winters, F Fahnestock, G Zane, Moira Hough, Louis J. Lamit, M Martinez, Robert M. Jones, Eh Kim, Virginia I. Rich, J Fisk, William T. Cooper, C Li, Rachel M. Wilson, Robert D. Hoelzle, N Torbick, Ellen Dorrepaal, N. Raab, D Nguyen, Ruth K. Varner, Apryl L. Perry, William J. Riley, Richard Wehr, Caitlin M. Singleton, K Bennett, Joanne H. Shorter, M. M. Tfaily, Matthew B. Sullivan, Rhiannon Mondav, Gene W. Tyson, Ben J. Woodcroft, Gareth Trubl, Amelia McClure
Publikováno v:
PeerJ, Vol 8, p e9467 (2020)
Modern microbial and ecosystem sciences require diverse interdisciplinary teams that are often challenged in “speaking” to one another due to different languages and data product types. Here we introduce the IsoGenie Database (IsoGenieDB; https:/
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2f31acc748c83d63c7418ae360d45bf6
http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-459743
http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-459743
Autor:
Alejandro Wolf-Yadlin, Ernest Fraenkel, Rastislav Bodik, Dylan R. Cronin, Aaron McKenna, Saurabh Srivastava, Kirsten Beck, Matthew E. MacGilvray, Jasmin Fisher, Ali Sinan Köksal, Nathan D. Camp, Anthony Gitter
Publikováno v:
Elsevier
Cell Reports, Vol 24, Iss 13, Pp 3607-3618 (2018)
Cell reports
Cell Reports, Vol 24, Iss 13, Pp 3607-3618 (2018)
Cell reports
We present a method for automatically discovering signaling pathways from time-resolved phosphoproteomic data. The Temporal Pathway Synthesizer (TPS) algorithm uses constraint-solving techniques first developed in the context of formal verification t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae4e639f51d02ab7df7f5bc01e6ea126
https://orcid.org/0000-0001-9249-8181
https://orcid.org/0000-0001-9249-8181