Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Dulce I. Valdivia"'
Autor:
José M. Ranz, Pablo M. González, Bryan D. Clifton, Nestor O. Nazario-Yepiz, Pablo L. Hernández-Cervantes, María J. Palma-Martínez, Dulce I. Valdivia, Andrés Jiménez-Kaufman, Megan M. Lu, Therese A. Markow, Cei Abreu-Goodger
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-13 (2021)
Ranz et al. present a high-quality genome assembly for the monarch butterfly Danaus plexippus and a comprehensive set of RNA sequencing data across different tissues and life stages. The authors construct an atlas portraying the breadth of gene expre
Externí odkaz:
https://doaj.org/article/c421965f47794a8093af74705238e508
Autor:
Peter F. Stadler, Manuela Geiß, David Schaller, Alitzel López Sánchez, Marcos González Laffitte, Dulce I. Valdivia, Marc Hellmuth, Maribel Hernández Rosales
Publikováno v:
Algorithms for Molecular Biology, Vol 15, Iss 1, Pp 1-20 (2020)
Abstract Background Many of the commonly used methods for orthology detection start from mutually most similar pairs of genes (reciprocal best hits) as an approximation for evolutionary most closely related pairs of genes (reciprocal best matches). T
Externí odkaz:
https://doaj.org/article/b2d7a667623a4363a60d45f12cc82c93
Autor:
Katia Aviña-Padilla, José Antonio Ramírez-Rafael, Gabriel Emilio Herrera-Oropeza, Vijaykumar Yogesh Muley, Dulce I. Valdivia, Erik Díaz-Valenzuela, Andrés García-García, Alfredo Varela-Echavarría, Maribel Hernández-Rosales
Publikováno v:
Frontiers in Genetics, Vol 12 (2021)
The structure of eukaryotic genes is generally a combination of exons interrupted by intragenic non-coding DNA regions (introns) removed by RNA splicing to generate the mature mRNA. A fraction of genes, however, comprise a single coding exon with int
Externí odkaz:
https://doaj.org/article/f2bffce6a299494b85ad21271cee8106
Autor:
Vladimir M. Jovanovic, Melanie Sarfert, Carlos S. Reyna-Blanco, Henrike Indrischek, Dulce I. Valdivia, Ekaterina Shelest, Katja Nowick
Publikováno v:
Frontiers in Genetics, Vol 12 (2021)
Gene regulatory factors (GRFs), such as transcription factors, co-factors and histone-modifying enzymes, play many important roles in modifying gene expression in biological processes. They have also been proposed to underlie speciation and adaptatio
Externí odkaz:
https://doaj.org/article/50891f2924434a0da163498ea06ea42b
Autor:
Maribel Hernández Rosales, Peter F. Stadler, Manuela Geiß, Dulce I. Valdivia, Marcos González Laffitte, Alitzel López Sánchez, Marc Hellmuth
Publikováno v:
Journal of Mathematical Biology
A wide variety of problems in computational biology, most notably the assessment of orthology, are solved with the help of reciprocal best matches. Using an evolutionary definition of best matches that captures the intuition behind the concept we cla
Autor:
Megan M. Lu, María J. Palma-Martínez, Bryan D. Clifton, Therese A. Markow, Andrés Jiménez-Kaufman, Nestor O. Nazario-Yepiz, Pablo Luis Hernández-Cervantes, Pablo M. González, Cei Abreu-Goodger, Dulce I. Valdivia, José M. Ranz
Publikováno v:
Communications Biology
Ranz, J M, González, P M, Clifton, B D, Nazario-Yepiz, N O, Hernández-Cervantes, P L, Palma-Martínez, M J, Valdivia, D I, Jiménez-Kaufman, A, Lu, M M, Markow, T A & Abreu-goodger, C 2021, ' A de novo transcriptional atlas in Danaus plexippus reveals variability in dosage compensation across tissues ', Communications biology, vol. 4, no. 1 . https://doi.org/10.1038/s42003-021-02335-3
Communications Biology, Vol 4, Iss 1, Pp 1-13 (2021)
Communications biology, vol 4, iss 1
Ranz, J M, González, P M, Clifton, B D, Nazario-Yepiz, N O, Hernández-Cervantes, P L, Palma-Martínez, M J, Valdivia, D I, Jiménez-Kaufman, A, Lu, M M, Markow, T A & Abreu-goodger, C 2021, ' A de novo transcriptional atlas in Danaus plexippus reveals variability in dosage compensation across tissues ', Communications biology, vol. 4, no. 1 . https://doi.org/10.1038/s42003-021-02335-3
Communications Biology, Vol 4, Iss 1, Pp 1-13 (2021)
Communications biology, vol 4, iss 1
A detailed knowledge of gene function in the monarch butterfly is still lacking. Here we generate a genome assembly from a Mexican nonmigratory population and used RNA-seq data from 14 biological samples for gene annotation and to construct an atlas
Autor:
Peter F. Stadler, Marcos González Laffitte, Manuela Geiß, Maribel Hernández Rosales, Dulce I. Valdivia, Bärbel M. R. Stadler, Alitzel López Sánchez, Marc Hellmuth, Edgar Chávez, David Schaller
Publikováno v:
Journal of Mathematical Biology
Best match graphs arise naturally as the first processing intermediate in algorithms for orthology detection. Let T be a phylogenetic (gene) tree T and \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \use
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7191f8dde7cba08e600156e1e9dce10f
http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-192158
http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-192158
Autor:
Megan M. Lu, Dulce I. Valdivia, Pablo M. González, María J. Palma-Martínez, Therese A. Markow, Andrés Jiménez-Kaufman, Bryan D. Clifton, Pablo Luis Hernández-Cervantes, Cei Abreu-Goodger, José M. Ranz, Nestor O. Nazario
The monarch butterfly epitomizes insect biodiversity decline. Understanding the genetic basis of the adaptation of the monarch to a changing environment requires genomic and transcriptomic resources that better reflect its genetic diversity while bei
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ffd941dc6a95daef38c586e9591fb8f1
https://doi.org/10.1101/2020.09.19.304162
https://doi.org/10.1101/2020.09.19.304162
Cographs are exactly the hereditarily well-colored graphs, i.e., the graphs for which a greedy vertex coloring of every induced subgraph uses only the minimally necessary number of colors $\chi(G)$. We show that greedy colorings are a special case of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97b9ab49bfbddca8c04ddf483a8c4e6e
Autor:
Dulce I. Valdivia, Edgar Chávez, Maribel Hernández Rosales, Bärbel M. R. Stadler, Alitzel López Sánchez, Marcos González Laffitte, Peter F. Stadler, Marc Hellmuth, Manuela Geiß
THIS IS A CORRECTED VERSION INCLUDING AN APPENDED CORRIGENDUM. Best match graphs arise naturally as the first processing intermediate in algorithms for orthology detection. Let $T$ be a phylogenetic (gene) tree $T$ and $\sigma$ an assignment of leave
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96a2987e521af10e4624d8cd7afb3bcc