Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes

Autor: Moore, JE, Abascal, F, Acosta, R, Addleman, NJ, Adrian, J, Afzal, V, Aken, B, Akiyama, JA, Jammal, OA, Amrhein, H, Anderson, SM, Edwards, MD, El-Ali, N, Elhajjajy, SI, Andrews, GR, Antoshechkin, I, Ardlie, KG, Armstrong, J, Astley, M, Banerjee, B, Barkal, AA, Barnes, IHA, Barozzi, I, Barrell, D, Barson, G, Bates, D, Baymuradov, UK, Bazile, C, Beer, MA, Beik, S, Bender, MA, Bennett, R, Bouvrette, LPB, Bernstein, BE, Berry, A, Bhaskar, A, Bignell, A, Blue, SM, Bodine, DM, Boix, C, Boley, N, Borrman, T, Borsari, B, Boyle, AP, Brandsmeier, LA, Breschi, A, Bresnick, EH, Brooks, JA, Buckley, M, Burge, CB, Byron, R, Cahill, E, Cai, L, Cao, L, Carty, M, Castanon, RG, Castillo, A, Chaib, H, Chan, ET, Chee, DR, Chee, S, Chen, H, Chen, JY, Chen, S, Cherry, JM, Chhetri, SB, Choudhary, JS, Chrast, J, Chung, D, Clarke, D, Cody, NAL, Coppola, CJ, Coursen, J, D’Ippolito, AM, Dalton, S, Danyko, C, Davidson, C, Davila-Velderrain, J, Davis, CA, Dekker, J, Deran, A, DeSalvo, G, Despacio-Reyes, G, Dewey, CN, Dickel, DE, Diegel, M, Diekhans, M, Dileep, V, Ding, B, Djebali, S, Dobin, A, Dominguez, D, Donaldson, S, Drenkow, J, Dreszer, TR, Drier, Y, Duff, MO, Dunn, D, Eastman, C, Ecker, JR

Publikováno v: Nature. 605:E3-E3

Online Correction for: https://doi.org/10.1038/s41586-020-2493-4 | Erratum for https://bura.brunel.ac.uk/handle/2438/21299 In the version of this article initially published, two members of the ENCODE Project Consortium were missing from the author l

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c9e320a8d924aa59ce7fdc8824698e8c
https://doi.org/10.1038/s41586-021-04226-3

Regulation of alternative splicing in Drosophila by 56 RNA binding proteins

Autor: Brooks, AN, Duff, MO, May, G, Yang, L, Bolisetty, M, Landolin, J, Wan, K, Sandler, J, Booth, BW, Celniker, SE, Graveley, BR, Brenner, SE

Publikováno v: Genome research, vol 25, iss 11
Brooks, AN; Duff, MO; May, G; Yang, L; Bolisetty, M; Landolin, J; et al.(2015). Regulation of alternative splicing in Drosophila by 56 RNA binding proteins. Genome Research, 25(11), 1771-1780. doi: 10.1101/gr.192518.115. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/5664w1xs

© 2015 Brooks et al. Alternative splicing is regulated by RNA binding proteins (RBPs) that recognize pre-mRNA sequence elements and activate or repress adjacent exons. Here, we used RNA interference and RNA-seq to identify splicing events regulated

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::4e6fb5b40574de54d5633d337096c432
https://escholarship.org/uc/item/5664w1xs

Author Correction: A large-scale binding and functional map of human RNA-binding proteins.

Autor: Van Nostrand EL; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Freese P; Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Pratt GA; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA.; Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA, USA., Wang X; Institut de Recherches Cliniques de Montréal (IRCM), Montreal, Quebec, Canada., Wei X; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA., Xiao R; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA.; Medical Research Institute, Wuhan University, Wuhan, China., Blue SM; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Chen JY; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Cody NAL; Institut de Recherches Cliniques de Montréal (IRCM), Montreal, Quebec, Canada., Dominguez D; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Olson S; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA., Sundararaman B; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Zhan L; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA., Bazile C; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Bouvrette LPB; Institut de Recherches Cliniques de Montréal (IRCM), Montreal, Quebec, Canada.; Department of Biochemistry and Molecular Medicine, Université de Montréal, Montreal, Quebec, Canada., Bergalet J; Institut de Recherches Cliniques de Montréal (IRCM), Montreal, Quebec, Canada., Duff MO; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA., Garcia KE; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Gelboin-Burkhart C; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Hochman M; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Lambert NJ; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Li H; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., McGurk MP; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Nguyen TB; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Palden T; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA., Rabano I; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Sathe S; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Stanton R; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Su A; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Wang R; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Yee BA; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Zhou B; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Louie AL; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Aigner S; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Fu XD; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA. xdfu@ucsd.edu.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA. xdfu@ucsd.edu., Lécuyer E; Institut de Recherches Cliniques de Montréal (IRCM), Montreal, Quebec, Canada. eric.lecuyer@ircm.qc.ca.; Department of Biochemistry and Molecular Medicine, Université de Montréal, Montreal, Quebec, Canada. eric.lecuyer@ircm.qc.ca.; Division of Experimental Medicine, McGill University, Montreal, Quebec, Canada. eric.lecuyer@ircm.qc.ca., Burge CB; Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, MA, USA. cburge@mit.edu.; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA. cburge@mit.edu.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA. cburge@mit.edu., Graveley BR; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA. graveley@uchc.edu., Yeo GW; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA. geneyeo@ucsd.edu.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA. geneyeo@ucsd.edu.; Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA, USA. geneyeo@ucsd.edu.

Publikováno v: Nature [Nature] 2021 Jan; Vol. 589 (7842), pp. E5.

A large-scale binding and functional map of human RNA-binding proteins.

Autor: Van Nostrand EL; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Freese P; Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Pratt GA; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA.; Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA, USA., Wang X; Institut de Recherches Cliniques de Montréal (IRCM), Montreal, Quebec, Canada., Wei X; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA., Xiao R; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA.; Medical Research Institute, Wuhan University, Wuhan, China., Blue SM; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Chen JY; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Cody NAL; Institut de Recherches Cliniques de Montréal (IRCM), Montreal, Quebec, Canada., Dominguez D; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Olson S; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA., Sundararaman B; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Zhan L; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA., Bazile C; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Bouvrette LPB; Institut de Recherches Cliniques de Montréal (IRCM), Montreal, Quebec, Canada.; Department of Biochemistry and Molecular Medicine, Université de Montréal, Montreal, Quebec, Canada., Bergalet J; Institut de Recherches Cliniques de Montréal (IRCM), Montreal, Quebec, Canada., Duff MO; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA., Garcia KE; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Gelboin-Burkhart C; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Hochman M; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Lambert NJ; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Li H; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., McGurk MP; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Nguyen TB; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Palden T; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA., Rabano I; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Sathe S; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Stanton R; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Su A; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Wang R; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Yee BA; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Zhou B; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Louie AL; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Aigner S; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Fu XD; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA. xdfu@ucsd.edu.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA. xdfu@ucsd.edu., Lécuyer E; Institut de Recherches Cliniques de Montréal (IRCM), Montreal, Quebec, Canada. eric.lecuyer@ircm.qc.ca.; Department of Biochemistry and Molecular Medicine, Université de Montréal, Montreal, Quebec, Canada. eric.lecuyer@ircm.qc.ca.; Division of Experimental Medicine, McGill University, Montreal, Quebec, Canada. eric.lecuyer@ircm.qc.ca., Burge CB; Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, MA, USA. cburge@mit.edu.; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA. cburge@mit.edu.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA. cburge@mit.edu., Graveley BR; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA. graveley@uchc.edu., Yeo GW; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA. geneyeo@ucsd.edu.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA. geneyeo@ucsd.edu.; Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA, USA. geneyeo@ucsd.edu.

Publikováno v: Nature [Nature] 2020 Jul; Vol. 583 (7818), pp. 711-719. Date of Electronic Publication: 2020 Jul 29.

Incidence of pancreatic cancer is dramatically increased by a high fat, high calorie diet in KrasG12D mice.

Autor: Chang HH; Department of Surgery, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America., Moro A; Department of Surgery, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America., Takakura K; Division of Digestive Diseases, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America.; Veterans Affairs Greater Los Angeles Healthcare System, Los Angeles, CA, United States of America., Su HY; Pancreatic Research Group, Department of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA, United States of America., Mo A; Center for Molecular Oncology, UCONN Health, Farmington, CT, United States of America., Nakanishi M; Center for Molecular Oncology, UCONN Health, Farmington, CT, United States of America., Waldron RT; Division of Digestive Diseases, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America.; Veterans Affairs Greater Los Angeles Healthcare System, Los Angeles, CA, United States of America.; Pancreatic Research Group, Department of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA, United States of America., French SW; Department of Pathology, Harbor-UCLA Medical Center, Torrance, CA, United States of America.; Southern California Research Center for ALPD and Cirrhosis, Department of Pathology, Keck School of Medicine of the University of Southern California, Los Angeles, CA, United States of America., Dawson DW; Department of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America., Hines OJ; Department of Surgery, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America., Li G; Department of Biostatistics, School of Public Health at UCLA, Los Angeles, CA, United States of America., Go VLW; Division of Digestive Diseases, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America., Sinnett-Smith J; Division of Digestive Diseases, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America.; Veterans Affairs Greater Los Angeles Healthcare System, Los Angeles, CA, United States of America., Pandol SJ; Division of Digestive Diseases, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America.; Veterans Affairs Greater Los Angeles Healthcare System, Los Angeles, CA, United States of America.; Pancreatic Research Group, Department of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA, United States of America., Lugea A; Division of Digestive Diseases, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America.; Veterans Affairs Greater Los Angeles Healthcare System, Los Angeles, CA, United States of America.; Pancreatic Research Group, Department of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA, United States of America., Gukovskaya AS; Division of Digestive Diseases, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America.; Veterans Affairs Greater Los Angeles Healthcare System, Los Angeles, CA, United States of America., Duff MO; Department of Genetics and Genome Sciences, UCONN Health, Farmington, CT, United States of America., Rosenberg DW; Center for Molecular Oncology, UCONN Health, Farmington, CT, United States of America., Rozengurt E; Division of Digestive Diseases, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America.; Veterans Affairs Greater Los Angeles Healthcare System, Los Angeles, CA, United States of America., Eibl G; Department of Surgery, David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America.

Publikováno v: PloS one [PLoS One] 2017 Sep 08; Vol. 12 (9), pp. e0184455. Date of Electronic Publication: 2017 Sep 08 (Print Publication: 2017).