Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Duane Rinehart"'
Autor:
Valerie B. O'Donnell, Markus M. Rinschen, Jingchuan Xue, Tao Huan, Shuzhao Li, Shankar Subramaniam, Duane Rinehart, Eoin Fahy, Gary Siuzdak, Amelia Palermo, H. Paul Benton
Publikováno v:
Anal Sci Adv
Archived metabolomics data represent a broad resource for the scientific community. However, the absence of tools for the meta-analysis of heterogeneous data types makes it challenging to perform direct comparisons in a single and cohesive workflow.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1325b4d8c0783f79115fdf26d7ffe3fd
https://doi.org/10.1002/ansa.202000042
https://doi.org/10.1002/ansa.202000042
Autor:
Gary Siuzdak, Duane Rinehart, H. Paul Benton, Xavier Domingo-Almenara, Amelia Palermo, David Edler, Tao Huan, Carlos Guijas, Julijana Ivanisevic, Thiery Phommavongsay, Benedikt Warth
Publikováno v:
Analytical Chemistry. 90:8396-8403
Comprehensive metabolomic data can be achieved using multiple orthogonal separation and mass spectrometry (MS) analytical techniques. However, drawing biologically relevant conclusions from this data and combining it with additional layers of informa
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f67f5efc02a041c3ab9770e19b127d73
https://doi.org/10.1021/acs.analchem.8b00875
https://doi.org/10.1021/acs.analchem.8b00875
Autor:
H. Paul Benton, Brian T. Abe, J. Rafael Montenegro-Burke, Luc Teyton, Mingliang Fang, Aries E. Aisporna, Julijana Ivanisevic, Duane Rinehart, Tao Huan, Luke L. Lairson, Erica M. Forsberg, Dennis W. Wolan, Benedikt Warth, Gary Siuzdak
Publikováno v:
Analytical Chemistry
Analytical chemistry, vol. 89, no. 2, pp. 1254-1259
Analytical chemistry, vol. 89, no. 2, pp. 1254-1259
The speed and throughput of analytical platforms has been a driving force in recent years in the "omics" technologies and while great strides have been accomplished in both chromatography and mass spectrometry, data analysis times have not benefited
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0ad64faa2d3d55fb1dba880c6da87a10
http://europepmc.org/articles/PMC5244434
http://europepmc.org/articles/PMC5244434
Autor:
Gary Siuzdak, Duane Rinehart, Paul D. Robbins, J. Rafael Montenegro-Burke, Farris L. Poole, Erica M. Forsberg, Luke L. Lairson, Tao Huan, Michael P. Thorgersen, Gregory P. Krantz, Thiery Phommavongsay, Matthew W. Fields, H. Paul Benton, Aries E. Aisporna, Michael W. W. Adams, Laura J. Niedernhofer, Trent R. Northen
Publikováno v:
Analytical chemistry, vol 88, iss 19
Montenegro-Burke, JR; Phommavongsay, T; Aisporna, AE; Huan, T; Rinehart, D; Forsberg, E; et al.(2016). Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses. Analytical Chemistry, 88(19), 9753-9758. doi: 10.1021/acs.analchem.6b02676. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/7mh5p3pt
Analytical Chemistry
Montenegro-Burke, JR; Phommavongsay, T; Aisporna, AE; Huan, T; Rinehart, D; Forsberg, E; et al.(2016). Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses. Analytical Chemistry, 88(19), 9753-9758. doi: 10.1021/acs.analchem.6b02676. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/7mh5p3pt
Analytical Chemistry
© 2016 American Chemical Society. Active data screening is an integral part of many scientific activities, and mobile technologies have greatly facilitated this process by minimizing the reliance on large hardware instrumentation. In order to meet w
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::616589b06fb6d6e329121256cc88502c
https://doi.org/10.1021/acs.analchem.6b02676
https://doi.org/10.1021/acs.analchem.6b02676
Publikováno v:
Trends Biotechnol
Cloud-based bioinformatic platforms address the fundamental demands of creating a flexible scientific environment, facilitating data processing and general accessibility independent of a countries’ affluence. These platforms have a multitude of adv
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::16b2a6a21e49981c58107cb40a8d7614
https://doi.org/10.1016/j.tibtech.2016.12.010
https://doi.org/10.1016/j.tibtech.2016.12.010
Autor:
Tao Huan, Brian Hilmers, Benedikt Warth, H. Paul Benton, Erica M. Forsberg, Gary Siuzdak, Duane Rinehart
Publikováno v:
Nature protocols. 13(4)
Systems biology is the study of complex living organisms, and as such, analysis on a systems-wide scale involves the collection of information-dense data sets that are representative of an entire phenotype. To uncover dynamic biological mechanisms, b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1e7df4f9d0cf08fa56bca583f2d57fed
https://pubmed.ncbi.nlm.nih.gov/28448069
https://pubmed.ncbi.nlm.nih.gov/28448069
Autor:
Gary J. Patti, Duane Rinehart, Julijana Ivanisevic, Michael E. Kurczy, Matthew Hicks, Caroline H. Johnson, H. Paul Benton, Mary E. Spilker, Mingliang Fang, Linh Hoang, Ralf Tautenhahn, Winnie Uritboonthai, Gary Siuzdak, Lisa Mellander, Anthony Aldebot
Publikováno v:
Bioinformatics. 31:3721-3724
Motivation: Metabolite databases provide a unique window into metabolome research allowing the most commonly searched biomarkers to be catalogued. Omic scale metabolite profiling, or metabolomics, is finding increased utility in biomarker discovery l
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b1f25e655eb104c40e56697ad20226d4
https://doi.org/10.1093/bioinformatics/btv475
https://doi.org/10.1093/bioinformatics/btv475
Autor:
Duane Rinehart, Elizabeth R Valentine, Baljit K. Ubhi, Lauren Franco, Gary J. Patti, Matthew W. Fields, Andrew Gieschen, Nathaniel G. Mahieu, Julijana Ivanisevic, Michael E. Kurczy, Caroline H. Johnson, H. Paul Benton, Harsha Gowda, Ralf Tautenhahn, Gary Siuzdak
Publikováno v:
Analytical Chemistry
An autonomous metabolomic workflow combining mass spectrometry analysis with tandem mass spectrometry data acquisition was designed to allow for simultaneous data processing and metabolite characterization. Although previously tandem mass spectrometr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8803c05d80b279e35eb4ff2cccf8df7c
https://doi.org/10.1021/ac5025649
https://doi.org/10.1021/ac5025649
Autor:
Adrian A. Epstein, Julijana Ivanisevic, Michael D. Boska, H. Paul Benton, Howard E. Gendelman, Gary Siuzdak, Duane Rinehart, Michael E. Kurczy
Publikováno v:
Metabolomics. 11:1029-1034
Heat maps are a commonly used visualization tool for metabolomic data where the relative abundance of ions detected in each sample is represented with color intensity. A limitation of applying heat maps to global metabolomic data, however, is the lar
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::92dc8a35ee5a24cd0be8fa1c280cd985
https://doi.org/10.1007/s11306-014-0759-2
https://doi.org/10.1007/s11306-014-0759-2
Autor:
Brian Hilmers, J. Rafael Montenegro-Burke, Duane Rinehart, Mingliang Fang, Scott Spangler, Antony J. Williams, Gary Siuzdak, Susan D. Richardson, Winnie Uritboonthai, Erica M. Forsberg, Aries E. Aisporna, Caroline H. Johnson, H. Paul Benton, Ana Granados, Linh Hoang, Tao Huan, Benedikt Warth, Richard L. Martin, Xavier Domingo-Almenara
Publikováno v:
Analytical chemistry. 89(21)
Concurrent exposure to a wide variety of xenobiotics and their combined toxic effects can play a pivotal role in health and disease, yet are largely unexplored. Investigating the totality of these exposures, i.e., the "exposome", and their specific b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2c3f4bcdca55508b845f5d6ef31c2ab9
https://pubmed.ncbi.nlm.nih.gov/28945073
https://pubmed.ncbi.nlm.nih.gov/28945073