Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Dries Rombaut"'
Autor:
Bieke Decaesteker, Geertrui Denecker, Christophe Van Neste, Emmy M. Dolman, Wouter Van Loocke, Moritz Gartlgruber, Carolina Nunes, Fanny De Vloed, Pauline Depuydt, Karen Verboom, Dries Rombaut, Siebe Loontiens, Jolien De Wyn, Waleed M. Kholosy, Bianca Koopmans, Anke H. W. Essing, Carl Herrmann, Daniel Dreidax, Kaat Durinck, Dieter Deforce, Filip Van Nieuwerburgh, Anton Henssen, Rogier Versteeg, Valentina Boeva, Gudrun Schleiermacher, Johan van Nes, Pieter Mestdagh, Suzanne Vanhauwaert, Johannes H. Schulte, Frank Westermann, Jan J. Molenaar, Katleen De Preter, Frank Speleman
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-17 (2018)
In high-risk neuroblastoma cases, gains in chromosome 17q are common. Here, the authors investigate the epigenomics and transcriptomics of neuroblastoma, identifying TBX2 as a core regulatory circuitry component enhancing the reactivation of DREAM ta
Externí odkaz:
https://doaj.org/article/536b907629694780b1f507b113373066
Autor:
Francisco Avila Cobos, Jasper Anckaert, Pieter-Jan Volders, Celine Everaert, Dries Rombaut, Jo Vandesompele, Katleen De Preter, Pieter Mestdagh
Publikováno v:
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-9 (2017)
Abstract Background Reconstructing transcript models from RNA-sequencing (RNA-seq) data and establishing these as independent transcriptional units can be a challenging task. Current state-of-the-art tools for long non-coding RNA (lncRNA) annotation
Externí odkaz:
https://doaj.org/article/63965fae480e470b887bdcccb0daefa9
Autor:
Nurten Yigit, Olivier Thas, Jasper Anckaert, Karen Verboom, Kaat Durinck, Jo Vandesompele, Yvan Saeys, Niels Vandamme, Franki Speleman, Dries Rombaut, Alemu Takele Assefa
Technological advances in transcriptome sequencing of single cells continues to provide an unprecedented view on tissue composition and cellular heterogeneity. While several studies have compared different single cell RNA-seq methods with respect to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::76cc7902724da2011490c5428304fe8c
https://doi.org/10.1101/2020.11.25.396523
https://doi.org/10.1101/2020.11.25.396523
Autor:
Dieter Deforce, Dries Rombaut, Karen Verboom, Jan J. Molenaar, Suzanne Vanhauwaert, Pieter Mestdagh, Johan van Nes, G Schleiermacher, Bieke Decaesteker, Johannes H. Schulte, Filip Van Nieuwerburgh, Franki Speleman, Christophe Van Neste, Rogier Versteeg, Jolien De Wyn, Carl Herrmann, Katleen De Preter, Geertrui Denecker, Moritz Gartlgruber, Kaat Durinck, Daniel Dreidax, Pauline Depuydt, Fanny De Vloed, Valentina Boeva, Wouter Van Loocke, Waleed M. Kholosy, Frank Westermann, Bianca Koopmans, Emmy Dolman, Anke H. W. Essing, Carolina de Carvalho Nunes, Siebe Loontiens, Anton G. Henssen
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-17 (2018)
Nature Communications
Nature communications, 9(1). Nature Publishing Group
NATURE COMMUNICATIONS
Nature Communications
Nature communications, 9(1). Nature Publishing Group
NATURE COMMUNICATIONS
Chromosome 17q gains are almost invariably present in high-risk neuroblastoma cases. Here, we perform an integrative epigenomics search for dosage-sensitive transcription factors on 17q marked by H3K27ac defined super-enhancers and identify TBX2 as t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::358e8858a0341eef79ecb61df7ffcf5b
https://doaj.org/article/536b907629694780b1f507b113373066
https://doaj.org/article/536b907629694780b1f507b113373066
Autor:
Stephen S. Roberts, Geertrui Denecker, Steve Lefever, Dries Rombaut, Christoph Bartenhagen, Agathe Peltier, Frank Speleman, Celine Everaert, Nurten Yigit, Pieter Mestdagh, Matthias Fischer, Jo Vandesompele, Isabelle Janoueix-Lerosey, Nicky D'Haene, Hua-Sheng Chiu, Katleen De Preter, Bieke Decaesteker, Pavel Sumazin
Publikováno v:
Scientific Reports, Vol 9, Iss 1, Pp 1-1 (2019)
Scientific Reports
Scientific Reports
Long intergenic non-coding RNAs (lincRNAs) are emerging as integral components of signaling pathways in various cancer types. In neuroblastoma, only a handful of lincRNAs are known as upstream regulators or downstream effectors of oncogenes. Here, we
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::788eab39403cc6fa6a7e0d44e8457900
https://doi.org/10.1038/s41598-019-46785-6
https://doi.org/10.1038/s41598-019-46785-6
Autor:
Pavel Sumazin, Nurten Yigit, Stephen S. Roberts, Pieter Mestdagh, Hua-Sheng Chiu, Matthias Fischer, Jo Vandesompele, Geertrui Denecker, Nicky D'Haene, Katleen De Preter, Isabelle Janoueix-Lerosey, Frank Speleman, Steve Lefever, Christoph Bartenhagen, Bieke Decaesteker, Dries Rombaut, Agathe Peltier, Celine Everaert
Publikováno v:
SCIENTIFIC REPORTS
Scientific Reports
Scientific reports, 9 (1
Scientific Reports, Vol 9, Iss 1, Pp 1-13 (2019)
Scientific Reports
Scientific reports, 9 (1
Scientific Reports, Vol 9, Iss 1, Pp 1-13 (2019)
Long intergenic non-coding RNAs (lincRNAs) are emerging as integral components of signaling pathways in various cancer types. In neuroblastoma, only a handful of lincRNAs are known as upstream regulators or downstream effectors of oncogenes. Here, we
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e69591ff475a6cab24b382f1aefacb42
https://biblio.ugent.be/publication/8608832
https://biblio.ugent.be/publication/8608832
Autor:
Morten T. Venø, Jo Vandesompele, Celine Everaert, Jasper Anckaert, Karen Verboom, Pieter Mestdagh, Dries Rombaut, Nurten Yigit, Nathalie Bolduc, Frank Speleman, Kenneth J. Livak, Jørgen Kjems
Publikováno v:
Single Cell Biology, Keystone symposium, Abstracts
Single cell RNA sequencing methods have been increasingly used to understand cellular heterogeneity. Nevertheless, most of these methods suffer from one or more limitations, such as focusing only on polyadenylated RNA, sequencing of only the 3’ end
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f2d39992c55cbe764441dd3d76de7fdf
https://hdl.handle.net/1854/LU-8599743
https://hdl.handle.net/1854/LU-8599743
Autor:
Jo Vandesompele, Celine Everaert, Jørgen Kjems, Simon Lee, Morten T. Venø, Dries Rombaut, Kenneth J. Livak, Pieter Mestdagh, Nurten Yigit, Nathalie Bolduc, Jasper Anckaert, Karen Verboom, Frank Speleman
Publikováno v:
NUCLEIC ACIDS RESEARCH
Verboom, K, Everaert, C, Bolduc, N, Livak, K J, Yigit, N, Rombaut, D, Anckaert, J, Lee, S, Venø, M T, Kjems, J, Speleman, F, Mestdagh, P & Vandesompele, J 2019, ' SMARTer single cell total RNA sequencing ', Nucleic Acids Research, vol. 47, no. 16, e93 . https://doi.org/10.1093/nar/gkz535
Nucleic Acids Research
Verboom, K, Everaert, C, Bolduc, N, Livak, K J, Yigit, N, Rombaut, D, Anckaert, J, Lee, S, Venø, M T, Kjems, J, Speleman, F, Mestdagh, P & Vandesompele, J 2019, ' SMARTer single cell total RNA sequencing ', Nucleic Acids Research, vol. 47, no. 16, e93 . https://doi.org/10.1093/nar/gkz535
Nucleic Acids Research
Single cell RNA sequencing methods have been increasingly used to understand cellular heterogeneity. Nevertheless, most of these methods suffer from one or more limitations, such as focusing only on polyadenylated RNA, sequencing of only the 3′ end
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5f1d45fa4c3694d8294009513fd2e1a0
https://hdl.handle.net/1854/LU-8617976
https://hdl.handle.net/1854/LU-8617976
Autor:
Jasper Anckaert, Francisco Avila Cobos, Pieter Mestdagh, Katleen De Preter, Pieter-Jan Volders, Jo Vandesompele, Dries Rombaut, Celine Everaert
Publikováno v:
BMC Bioinformatics
BMC BIOINFORMATICS
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-9 (2017)
BMC BIOINFORMATICS
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-9 (2017)
Background Reconstructing transcript models from RNA-sequencing (RNA-seq) data and establishing these as independent transcriptional units can be a challenging task. Current state-of-the-art tools for long non-coding RNA (lncRNA) annotation are mainl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::257d970aeaca2b63e52718bde31c351f
https://pubmed.ncbi.nlm.nih.gov/28464823
https://pubmed.ncbi.nlm.nih.gov/28464823
Autor:
Pieter Rondou, F Avila Cobos, P. Van Vlierberghe, Jo Vandesompele, Pieter-Jan Volders, Pieter Mestdagh, Annelynn Wallaert, Bruce Poppe, Kaat Durinck, Filip Matthijssens, Tom Taghon, Franki Speleman, W Van Loocke, I Van de Walle, Dries Rombaut, Jean Soulier
Publikováno v:
Europe PubMed Central
Long noncoding RNA signatures define oncogenic subtypes in T-cell acute lymphoblastic leukemia
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::113ede50491a7802a0e199cc4d8d3652
http://europepmc.org/abstract/med/27168467
http://europepmc.org/abstract/med/27168467