Development of a syndromic surveillance system for Irish dairy cattle using milk recording data.

Autor: Douglass AP; School of Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland., O'Grady L; School of Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland; School of Veterinary Medicine and Science, University of Nottingham, Nottingham, UK., McGrath G; Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Belfield, Dublin, Ireland., Tratalos J; Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Belfield, Dublin, Ireland., Mee JF; Animal and Bioscience Research Department, Teagasc, Moorepark Research Centre, Fermoy, Co. Cork, P61 C997, Ireland., Barrett D; One Health One Welfare Scientific Support Unit, Department of Agriculture, Food and the Marine, Agriculture House, Dublin, Ireland., Sánchez-Miguel C; Cork Regional Veterinary Laboratory, DAFM, Bishopstown, Cork, Ireland., More SJ; Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Belfield, Dublin, Ireland., Madouasse A; INRAE, Oniris, BIOEPAR, 44300, Nantes, France., Green M; School of Veterinary Medicine and Science, University of Nottingham, Nottingham, UK., Madden JM; Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin, Belfield, Dublin, Ireland., McAloon CG; School of Veterinary Medicine, University College Dublin, Belfield, Dublin 4, Ireland. Electronic address: conor.mcaloon@ucd.ie.

Publikováno v: Preventive veterinary medicine [Prev Vet Med] 2022 Jul; Vol. 204, pp. 105667. Date of Electronic Publication: 2022 May 10.

Coverage-Versus-Length Plots, a Simple Quality Control Step for de Novo Yeast Genome Sequence Assemblies.

Autor: Douglass AP; School of Medicine, UCD Conway Institute, University College Dublin, Dublin 4, Ireland., O'Brien CE; School of Biomolecular and Biomedical Sciences, UCD Conway Institute, University College Dublin, Dublin 4, Ireland., Offei B; School of Medicine, UCD Conway Institute, University College Dublin, Dublin 4, Ireland., Coughlan AY; School of Medicine, UCD Conway Institute, University College Dublin, Dublin 4, Ireland., Ortiz-Merino RA; School of Medicine, UCD Conway Institute, University College Dublin, Dublin 4, Ireland., Butler G; School of Biomolecular and Biomedical Sciences, UCD Conway Institute, University College Dublin, Dublin 4, Ireland., Byrne KP; School of Medicine, UCD Conway Institute, University College Dublin, Dublin 4, Ireland., Wolfe KH; School of Medicine, UCD Conway Institute, University College Dublin, Dublin 4, Ireland kenneth.wolfe@ucd.ie.

Publikováno v: G3 (Bethesda, Md.) [G3 (Bethesda)] 2019 Mar 07; Vol. 9 (3), pp. 879-887. Date of Electronic Publication: 2019 Mar 07.

Comparative genomics of biotechnologically important yeasts.

Autor: Riley R; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Haridas S; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Wolfe KH; University College Dublin Conway Institute, School of Medicine, University College Dublin, Dublin 4, Ireland;, Lopes MR; Laboratory of Genetics, Genetics/Biotechnology Center, University of Wisconsin-Madison, Madison, WI 53706; Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, 31270-901, Brazil;, Hittinger CT; Laboratory of Genetics, Genetics/Biotechnology Center, University of Wisconsin-Madison, Madison, WI 53706; Department of Energy Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53726;, Göker M; Deutsche Sammlung von Mikroorganismen und Zellkulturen German Collection of Microorganisms and Cell Cultures, Leibniz Institute, 38124 Braunschweig, Germany;, Salamov AA; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Wisecaver JH; Department of Biological Sciences, Vanderbilt University, Nashville, TN 37235;, Long TM; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706; US Department of Agriculture Forest Products Laboratory, Madison, WI 53726;, Calvey CH; Xylome Corporation, Madison, WI 53719;, Aerts AL; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Barry KW; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Choi C; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Clum A; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Coughlan AY; University College Dublin Conway Institute, School of Medicine, University College Dublin, Dublin 4, Ireland;, Deshpande S; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Douglass AP; University College Dublin Conway Institute, School of Medicine, University College Dublin, Dublin 4, Ireland;, Hanson SJ; University College Dublin Conway Institute, School of Medicine, University College Dublin, Dublin 4, Ireland;, Klenk HP; Deutsche Sammlung von Mikroorganismen und Zellkulturen German Collection of Microorganisms and Cell Cultures, Leibniz Institute, 38124 Braunschweig, Germany; School of Biology, Newcastle University, Newcastle upon Tyne NE1 7RU, United Kingdom;, LaButti KM; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Lapidus A; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Lindquist EA; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Lipzen AM; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Meier-Kolthoff JP; Deutsche Sammlung von Mikroorganismen und Zellkulturen German Collection of Microorganisms and Cell Cultures, Leibniz Institute, 38124 Braunschweig, Germany;, Ohm RA; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Otillar RP; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Pangilinan JL; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Peng Y; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Rokas A; Department of Biological Sciences, Vanderbilt University, Nashville, TN 37235;, Rosa CA; Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, 31270-901, Brazil;, Scheuner C; Deutsche Sammlung von Mikroorganismen und Zellkulturen German Collection of Microorganisms and Cell Cultures, Leibniz Institute, 38124 Braunschweig, Germany;, Sibirny AA; Department of Molecular Genetics and Biotechnology, Institute of Cell Biology, National Academy of Sciences of Ukraine, Lviv 79005, Ukraine; Department of Biotechnology and Microbiology, University of Rzeszow, Rzeszow 35-601, Poland;, Slot JC; Department of Plant Pathology, Ohio State University, Columbus, OH 43210;, Stielow JB; Deutsche Sammlung von Mikroorganismen und Zellkulturen German Collection of Microorganisms and Cell Cultures, Leibniz Institute, 38124 Braunschweig, Germany; Centraalbureau voor Schimmelcultures Fungal Biodiversity Centre, Royal Netherlands Academy of Arts and Sciences, 3508 AD, Utrecht, The Netherlands;, Sun H; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598;, Kurtzman CP; Agricultural Research Service, National Center for Agricultural Utilization Research, US Department of Agriculture, Peoria, IL 61604;, Blackwell M; Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803; Department of Biological Sciences, University of South Carolina, Columbia, SC 29208., Grigoriev IV; Department of Energy Joint Genome Institute, Walnut Creek, CA 94598; IVGrigoriev@lbl.gov twjeffri@wisc.edu., Jeffries TW; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706; IVGrigoriev@lbl.gov twjeffri@wisc.edu.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2016 Aug 30; Vol. 113 (35), pp. 9882-7. Date of Electronic Publication: 2016 Aug 17.