A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification

Autor: Douglas Abrams, Parveen Kumar, R. Krishna Murthy Karuturi, Joshy George

Publikováno v: BMC Bioinformatics, Vol 20, Iss S11, Pp 1-6 (2019)

Abstract Background The advent of single cell RNA sequencing (scRNA-seq) enabled researchers to study transcriptomic activity within individual cells and identify inherent cell types in the sample. Although numerous computational tools have been deve

Externí odkaz: https://doaj.org/article/079dcdad99db49d695804b5edb78ac7f

HBeeID: a molecular tool that identifies honey bee subspecies from different geographic populations.

Autor: Donthu R; Puerto Rico Science, Technology and Research Trust, San Juan, PR, 00927, USA.; Centre for Life Sciences, Mahindra University, Bahadurpally, Hyderabad, 500043, India., Marcelino JAP; Puerto Rico Science, Technology and Research Trust, San Juan, PR, 00927, USA.; Florida Department of Agriculture and Consumer Services, Division of Plant Industry, Gainesville, FL, 32608, USA., Giordano R; Puerto Rico Science, Technology and Research Trust, San Juan, PR, 00927, USA. rgiordano500@gmail.com.; Institute of Environment, Florida International University, Miami, FL, 33199, USA. rgiordano500@gmail.com., Tao Y; Department of Electrical and Computer Engineering, University of Miami, Coral Gables, FL, 33146, USA., Weber E; Office of Institutional Research, Dartmouth College, Hanover, NH, 03755, USA., Avalos A; USDA-ARS, Honey Bee Breeding, Genetics and Physiology Research, Baton Rouge, LA, 70820, USA., Band M; Roy J. Carver Biotechnology Center, University of Illinois, Urbana-Champaign, IL, 61801, USA., Akraiko T; Roy J. Carver Biotechnology Center, University of Illinois, Urbana-Champaign, IL, 61801, USA., Chen SC; Data Science and Analytics Innovation Center (dSAIC), University of Missouri-Kansas City, Kansas City, MO, 64110, USA., Reyes MP; Knight Foundation School of Computing and Information Sciences, Florida International University, Miami, FL, 33199, USA., Hao H; Johns Hopkins University School of Medicine, Baltimore, MD, 21205, USA., Ortiz-Alvarado Y; Department of Biology, University of Puerto Rico, San Juan, PR, 00931, USA., Cuff CA; Department of Biology, University of Puerto Rico, San Juan, PR, 00931, USA., Claudio EP; Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15206, USA., Soto-Adames F; Florida Department of Agriculture and Consumer Services, Division of Plant Industry, Gainesville, FL, 32608, USA., Smith-Pardo AH; USDA-APHIS-PPQ, Science and Technology (S&T), Sacramento, CA, 95814, USA., Meikle WG; USDA-ARS, Carl Hayden Bee Research Center, Tucson, AZ, 85719, USA., Evans JD; USDA-ARS, Bee Research Laboratory, Beltsville, MD, 20705, USA. jay.evans@usda.gov., Giray T; Department of Biology, University of Puerto Rico, San Juan, PR, 00931, USA. tgiray2@yahoo.com., Abdelkader FB; University of Carthage, National Agronomic Institute of Tunisia, 1082, Tunis, Tunisia., Allsopp M; Honey Bee Research Section, ARC-Plant Protection & Health, P/Bag X5017, Stellenbosch, 7599, South Africa., Ball D; Forest Fruits Ltd, Lusaka, Zambia., Morgado SB; Meltagus, Associação de Apicultores do Parque Natural do Tejo Internacional, 6000-790, Castelo Branco, Portugal., Barjadze S; Institute of Zoology, Ilia State University, 3 Giorgi Tsereteli Street, 0162, Tbilisi, Georgia., Correa-Benitez A; Facultad de MedicinaVeterinaria y Zootecnia, Departamento de Medicina y Zootecnia de Abejas, Conejos y Organismos Aquáticos (DMZ:ACyOA), Universidad Nacional Autónoma de México, 04510, Ciudad de Mexico, CP, Mexico., Chakir A; Applied Chemistry Laboratory, Semlalia Faculty of Sciences, University Cadi Ayyad, Marrakech, Morocco., Báez DR; Amateur Beekeeper, Oviedo, FL, 32765, USA., Chavez NHM; Cochabamba Beekeepers Federation (FEDAC), Aniceto Padilla, 493, Cochabamba, Bolivia., Dalmon A; INRAE, French National Research Institute for Agriculture, Food and Environment. UR Abeilles et Environment, 84914, Avignon, France., Douglas AB; Institute of Earth Systems, Rural Sciences Farmhouse, University of Malta, Msida, 2080, MSD, Malta., Fraccica C; Florida Department of Agriculture and Consumer Services, Division of Plant Industry, Gainesville, FL, 32608, USA., Fernández-Marín H; Centro de Biodiversidad y Descubrimiento de Drogas, Instituto de Investigaciones Científicas y Servicios de Alta Tecnología (INDICASAT AIP), Clayton Panama, 0843-01103, Panama., Galindo-Cardona A; Instituto de Ecología Regional (IER), Universidad Nacional de Tucumán (UNT) - Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). Yerba Buena, CC 34, CP 4107, Tucumán, Argentina., Guzman-Novoa E; School of Environmental Sciences, University of Guelph, 50 Stone Road East, Guelph, ON, N1G 2W1, Canada., Horsburgh R; Florida Department of Agriculture and Consumer Services, Division of Plant Industry, Gainesville, FL, 32608, USA., Kence M; Biology Department, Middle East Technical University, 06530, Ankara, Turkey., Kilonzo J; International Centre of Insect Physiology and Ecology, Nairobi, Kenya., Kükrer M; Biology Department, Middle East Technical University, 06530, Ankara, Turkey.; Molecular Biology and Genetics Department, Kilis 7 Aralık University, Kilis, Turkey., Le Conte Y; INRAE, French National Research Institute for Agriculture, Food and Environment. UR Abeilles et Environment, 84914, Avignon, France., Mazzeo G; Dipartimento di Agricoltura, Alimentazione e Ambiente (Di3A), Università Degli Studi Di Catania, Catania, Italy., Mota F; Independent Beekeeper, 6000, Castelo Branco, Portugal., Muli E; International Centre of Insect Physiology and Ecology, Nairobi, Kenya.; South Eastern Kenya University (SEKU), JXFW+X3C, Kitui, Kenya., Oskay D; Department of Agricultural Biotechnology, Tekirdağ Namık Kemal University, 59030, Tekirdağ, Turkey., Ruiz-Martínez JA; Professional Training in Livestock and Animal Health, High School Lope de Vega, Fuente Obejuna, Córdoba, Spain., Oliveri E; Istituto Zooprofilattico Sperimentale della Sicilia, 90129, Palermo, Italy., Pichkhaia I; Chkhorotsku Local Historical Museum, David Aghmashenebeli St., 5000, Chkhorotsku, Georgia., Romane A; Applied Chemistry Laboratory, Semlalia Faculty of Sciences, University Cadi Ayyad, Marrakech, Morocco., Sanchez CG; Escuela de Agronomía, Sede del Atlántico, University of Costa Rica, Turrialba, 30501, Costa Rica., Sikombwa E; Forest Fruits Ltd, Lusaka, Zambia., Satta A; Department of Agricultural Sciences, University of Sassari, Viale Italia 39A, 07100, Sassari, Italy., Scannapieco AA; Instituto de Genética Gv IABIMO, INTA-CONICET, Buenos Aires, Argentina., Stanford B; Florida Department of Agriculture and Consumer Services, Division of Plant Industry, Gainesville, FL, 32608, USA., Soroker V; Agricultural Research Organization, The Volcani Center, Institute of Plant Protection, Department of Entomology, Bet-Dagan, Israel., Velarde RA; Bolivian Apiculture Institute (IAB), PROMIEL-SEDEM, Jaimes Freyre No 2344, La Paz, Bolivia., Vercelli M; Monica Vercelli Independent Researcher, Turin, Italy., Huang Z; Department of Entomology, MSU Apiculture Lab, Michigan State University, East Lansing, MI, 48824, USA.

Publikováno v: BMC bioinformatics [BMC Bioinformatics] 2024 Aug 27; Vol. 25 (1), pp. 278. Date of Electronic Publication: 2024 Aug 27.

Sighting characteristics and photo-identification of Cuvier's beaked whales ( Ziphius cavirostris ) near San Clemente Island, California: a key area for beaked whales and the military?

Autor: Falcone EA; Cascadia Research Collective, 218 ½ W. Fourth Avenue, Olympia, WA 98501 USA., Schorr GS; Cascadia Research Collective, 218 ½ W. Fourth Avenue, Olympia, WA 98501 USA., Douglas AB; Cascadia Research Collective, 218 ½ W. Fourth Avenue, Olympia, WA 98501 USA., Calambokidis J; Cascadia Research Collective, 218 ½ W. Fourth Avenue, Olympia, WA 98501 USA., Henderson E; Scripps Institution of Oceanography, 9500 Gilman Drive, Mail Code 0210, La Jolla, CA 92093-0210 USA., McKenna MF; Scripps Institution of Oceanography, 9500 Gilman Drive, Mail Code 0210, La Jolla, CA 92093-0210 USA., Hildebrand J; Scripps Institution of Oceanography, 9500 Gilman Drive, Mail Code 0210, La Jolla, CA 92093-0210 USA., Moretti D; NAVSEA Division Newport, 1176 Howell Avenue, Newport, RI 02841 USA.

Publikováno v: Marine biology [Mar Biol] 2009; Vol. 156 (12), pp. 2631-2640. Date of Electronic Publication: 2009 Sep 01.