Zobrazeno 1 - 10
of 135
pro vyhledávání: '"Dorothee, Staiger"'
Autor:
Marlene Reichel, Olga Schmidt, Mandy Rettel, Frank Stein, Tino Köster, Falk Butter, Dorothee Staiger
Publikováno v:
BMC Plant Biology, Vol 24, Iss 1, Pp 1-21 (2024)
Abstract Background The interaction of proteins with RNA in the cell is crucial to orchestrate all steps of RNA processing. RNA interactome capture (RIC) techniques have been implemented to catalogue RNA- binding proteins in the cell. In RIC, RNA-pro
Externí odkaz:
https://doaj.org/article/9427ac8f646348919b24242a139042b5
Autor:
Alexander Steffen, Katarzyna Dombert, María José Iglesias, Christine Nolte, María José de Leone, Marcelo J. Yanovsky, Julieta L. Mateos, Dorothee Staiger
Publikováno v:
Plants, Vol 13, Iss 19, p 2771 (2024)
PROTEIN ARGININE METHYLTRANSFERASES (PRMTs) catalyze arginine (R) methylation that is critical for transcriptional and post-transcriptional gene regulation. In Arabidopsis, PRMT5 that catalyzes symmetric R dimethylation is best characterized. PRMT5 m
Externí odkaz:
https://doaj.org/article/9cc1187ca4fd4c0e9dbb6cf2510cc12c
Publikováno v:
Scientific Reports, Vol 13, Iss 1, Pp 1-15 (2023)
Abstract Arabidopsis SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1) delays the transition from vegetative to reproductive development in noninductive conditions. A second-site suppressor screen for novel genes that overcome early flowering of srr1-1 ident
Externí odkaz:
https://doaj.org/article/400c64e8e74d47399e5f562dad5c19ed
Autor:
Runxuan Zhang, Richard Kuo, Max Coulter, Cristiane P. G. Calixto, Juan Carlos Entizne, Wenbin Guo, Yamile Marquez, Linda Milne, Stefan Riegler, Akihiro Matsui, Maho Tanaka, Sarah Harvey, Yubang Gao, Theresa Wießner-Kroh, Alejandro Paniagua, Martin Crespi, Katherine Denby, Asa ben Hur, Enamul Huq, Michael Jantsch, Artur Jarmolowski, Tino Koester, Sascha Laubinger, Qingshun Quinn Li, Lianfeng Gu, Motoaki Seki, Dorothee Staiger, Ramanjulu Sunkar, Zofia Szweykowska-Kulinska, Shih-Long Tu, Andreas Wachter, Robbie Waugh, Liming Xiong, Xiao-Ning Zhang, Ana Conesa, Anireddy S. N. Reddy, Andrea Barta, Maria Kalyna, John W. S. Brown
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-37 (2022)
Abstract Background Accurate and comprehensive annotation of transcript sequences is essential for transcript quantification and differential gene and transcript expression analysis. Single-molecule long-read sequencing technologies provide improved
Externí odkaz:
https://doaj.org/article/a753e2cdc48c4e7cbc7f127b69335e29
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-6 (2020)
Abstract Background RNA-binding proteins interact with their target RNAs at specific sites. These binding sites can be determined genome-wide through individual nucleotide resolution crosslinking immunoprecipitation (iCLIP). Subsequently, the binding
Externí odkaz:
https://doaj.org/article/8a8189cf09694552ae2d3b1f51d83cc9
Autor:
Laura Arribas-Hernández, Sarah Rennie, Tino Köster, Carlotta Porcelli, Martin Lewinski, Dorothee Staiger, Robin Andersson, Peter Brodersen
Publikováno v:
eLife, Vol 10 (2021)
Specific recognition of N6-methyladenosine (m6A) in mRNA by RNA-binding proteins containing a YT521-B homology (YTH) domain is important in eukaryotic gene regulation. The Arabidopsis YTH domain protein ECT2 is thought to bind to mRNA at URU(m6A)Y si
Externí odkaz:
https://doaj.org/article/c4c5250bada5435a997e38dc94e14e1e
Publikováno v:
BMC Plant Biology, Vol 19, Iss 1, Pp 1-12 (2019)
Abstract Background Correct timing of flowering is critical for plants to produce enough viable offspring. In Arabidopsis thaliana (Arabidopsis), flowering time is regulated by an intricate network of molecular signaling pathways. Arabidopsis srr1–
Externí odkaz:
https://doaj.org/article/78c5a414637e41a0a1fa4603cc40c23f
Publikováno v:
Plants, Vol 11, Iss 9, p 1105 (2022)
Plants use complex gene regulatory mechanisms to overcome diverse environmental challenges. For instance, cold stress induces rapid and massive transcriptome changes via alternative splicing (AS) to confer cold tolerance in plants. In mammals, mounti
Externí odkaz:
https://doaj.org/article/5458a581c30e43809e7482ada47cd3f2
Autor:
Katja Meyer, Tino Köster, Christine Nolte, Claus Weinholdt, Martin Lewinski, Ivo Grosse, Dorothee Staiger
Publikováno v:
Genome Biology, Vol 18, Iss 1, Pp 1-22 (2017)
Abstract Background Functions for RNA-binding proteins in orchestrating plant development and environmental responses are well established. However, the lack of a genome-wide view of their in vivo binding targets and binding landscapes represents a g
Externí odkaz:
https://doaj.org/article/56e0908ee67e415cb0ea98ac9a89dfa4
Publikováno v:
Frontiers in Plant Science, Vol 10 (2019)
Externí odkaz:
https://doaj.org/article/8bb8deab1bb648aea7a5c1fbf9dd98ff