Zobrazeno 1 - 10
of 224
pro vyhledávání: '"Doreen, Ware"'
Autor:
Muskan Kapoor, Enrique Sapena Ventura, Amy Walsh, Alexey Sokolov, Nancy George, Sunita Kumari, Nicholas J. Provart, Benjamin Cole, Marc Libault, Timothy Tickle, Wesley C. Warren, James E. Koltes, Irene Papatheodorou, Doreen Ware, Peter W. Harrison, Christine Elsik, Galabina Yordanova, Tony Burdett, Christopher K. Tuggle
Publikováno v:
Frontiers in Genetics, Vol 15 (2024)
IntroductionThe agriculture genomics community has numerous data submission standards available, but the standards for describing and storing single-cell (SC, e.g., scRNA- seq) data are comparatively underdeveloped.MethodsTo bridge this gap, we lever
Externí odkaz:
https://doaj.org/article/133bd036ce5c49aa9b32e0629a9046ce
Autor:
Yong Zhou, Nagarajan Kathiresan, Zhichao Yu, Luis F. Rivera, Yujian Yang, Manjula Thimma, Keerthana Manickam, Dmytro Chebotarov, Ramil Mauleon, Kapeel Chougule, Sharon Wei, Tingting Gao, Carl D. Green, Andrea Zuccolo, Weibo Xie, Doreen Ware, Jianwei Zhang, Kenneth L. McNally, Rod A. Wing
Publikováno v:
BMC Biology, Vol 22, Iss 1, Pp 1-15 (2024)
Abstract Background Single-nucleotide polymorphisms (SNPs) are the most widely used form of molecular genetic variation studies. As reference genomes and resequencing data sets expand exponentially, tools must be in place to call SNPs at a similar pa
Externí odkaz:
https://doaj.org/article/fe1b91bbacd94ec78f5e766857ce4062
Autor:
Marcela K Tello-Ruiz, Cristina F Marco, Fei-Man Hsu, Rajdeep S Khangura, Pengfei Qiao, Sirjan Sapkota, Michelle C Stitzer, Rachael Wasikowski, Hao Wu, Junpeng Zhan, Kapeel Chougule, Lindsay M Barone, Cornel Ghiban, Demitri Muna, Andrew C Olson, Liya Wang, Doreen Ware, David A Micklos
Publikováno v:
PLoS ONE, Vol 19, Iss 11, p e0314495 (2024)
[This corrects the article DOI: 10.1371/journal.pone.0224086.].
Externí odkaz:
https://doaj.org/article/de46b68cbdc148e5bc71e3e74b04b2b7
Autor:
Yong Zhou, Zhichao Yu, Dmytro Chebotarov, Kapeel Chougule, Zhenyuan Lu, Luis F. Rivera, Nagarajan Kathiresan, Noor Al-Bader, Nahed Mohammed, Aseel Alsantely, Saule Mussurova, João Santos, Manjula Thimma, Maxim Troukhan, Alice Fornasiero, Carl D. Green, Dario Copetti, David Kudrna, Victor Llaca, Mathias Lorieux, Andrea Zuccolo, Doreen Ware, Kenneth McNally, Jianwei Zhang, Rod A. Wing
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-14 (2023)
Pan-genomes provide useful resources for evolutionary studies, functional genomics and breeding of cultivated plants. Here, the authors report a new rice pan-genome including 73 Asian rice and two wild relatives (Oryza rufipogon and O. punctata), and
Externí odkaz:
https://doaj.org/article/09a7a53e40004e98a54055c381782826
Autor:
Lifang Zhang, Janeen Braynen, Audrey Fahey, Kriti Chopra, Paolo Cifani, Dimiru Tadesse, Michael Regulski, Fangle Hu, Hubertus J. J. van Dam, Meng Xie, Doreen Ware, Crysten E. Blaby-Haas
Publikováno v:
Frontiers in Plant Science, Vol 14 (2023)
Metal homeostasis has evolved to tightly modulate the availability of metals within the cell, avoiding cytotoxic interactions due to excess and protein inactivity due to deficiency. Even in the presence of homeostatic processes, however, low bioavail
Externí odkaz:
https://doaj.org/article/b613c1d4f2ff469883111b9f3bf5cdcb
Autor:
Ángel Ferrero-Serrano, Megan M. Sylvia, Peter C. Forstmeier, Andrew J. Olson, Doreen Ware, Philip C. Bevilacqua, Sarah M. Assmann
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-28 (2022)
Abstract Background Genome-wide association studies (GWAS) aim to correlate phenotypic changes with genotypic variation. Upon transcription, single nucleotide variants (SNVs) may alter mRNA structure, with potential impacts on transcript stability, m
Externí odkaz:
https://doaj.org/article/cfe49a78c2444943acf08463eef1a3ac
Autor:
Amandine Velt, Bianca Frommer, Sophie Blanc, Daniela Holtgräwe, Éric Duchêne, Vincent Dumas, Jérôme Grimplet, Philippe Hugueney, Catherine Kim, Marie Lahaye, José Tomás Matus, David Navarro-Payá, Luis Orduña, Marcela K Tello-Ruiz, Nicola Vitulo, Doreen Ware, Camille Rustenholz
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 13, Iss 5 (2023)
AbstractThe genome sequence of the diploid and highly homozygous Vitis viniferaVitis.
Externí odkaz:
https://doaj.org/article/80230ae6cc634f8c8e5c338a5195cb5d
Autor:
William G. Voelker, Krittika Krishnan, Kapeel Chougule, Louie C. Alexander, Zhenyuan Lu, Andrew Olson, Doreen Ware, Kittikun Songsomboon, Cristian Ponce, Zachary W. Brenton, J. Lucas Boatwright, Elizabeth A. Cooper
Publikováno v:
Frontiers in Plant Science, Vol 13 (2023)
IntroductionSorghum (Sorghum bicolor (L.) Moench) is an agriculturally and economically important staple crop that has immense potential as a bioenergy feedstock due to its relatively high productivity on marginal lands. To capitalize on and further
Externí odkaz:
https://doaj.org/article/2cf6204a53cc44a895fb862903a47ba8
Autor:
Nicholas Gladman, Barbara Hufnagel, Michael Regulski, Zhigang Liu, Xiaofei Wang, Kapeel Chougule, Leon Kochian, Jurandir Magalhães, Doreen Ware
Publikováno v:
Plant Direct, Vol 6, Iss 5, Pp n/a-n/a (2022)
Abstract Efficient acquisition and use of available phosphorus from the soil is crucial for plant growth, development, and yield. With an ever‐increasing acreage of croplands with suboptimal available soil phosphorus, genetic improvement of sorghum
Externí odkaz:
https://doaj.org/article/e8e72ec4b3a34d979eab777fd23f8a0a
Autor:
Shujun Ou, Jianing Liu, Kapeel M. Chougule, Arkarachai Fungtammasan, Arun S. Seetharam, Joshua C. Stein, Victor Llaca, Nancy Manchanda, Amanda M. Gilbert, Sharon Wei, Chen-Shan Chin, David E. Hufnagel, Sarah Pedersen, Samantha J. Snodgrass, Kevin Fengler, Margaret Woodhouse, Brian P. Walenz, Sergey Koren, Adam M. Phillippy, Brett T. Hannigan, R. Kelly Dawe, Candice N. Hirsch, Matthew B. Hufford, Doreen Ware
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-10 (2020)
Sequence depth and read length determine the quality of genome assembly. Here, the authors leverage a set of PacBio reads to develop guidelines for sequencing and assembly of complex plant genomes in order to allocate finite resources using maize as
Externí odkaz:
https://doaj.org/article/9bfad55a4173428f8acffe7c51e13452