Výsledky vyhledávání - "Donnart, Tifenn"

Dissertation/ Thesis

Etude d'un clade de rétrotransposons Copia : les GalEa, au sein des génomes eucaryotes

Autor: Donnart, Tifenn

Les éléments transposables jouent un rôle majeur dans l’évolution des génomes eucaryotes. La connaissance de la distribution des éléments transposables entre différentes espèces au sein d’un même taxon est une condition essentielle pour

Externí odkaz: http://www.theses.fr/2015PA066017/document

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Akademický článek

Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi.

Autor: Donnart, Tifenn¹, Piednoël, Mathieu², Higuet, Dominique¹, Bonnivard, Éric¹ eric.bonnivard@upmc.fr

Publikováno v: BMC Genomics. 5/25/2017, Vol. 18, p1-15. 15p. 3 Diagrams, 2 Charts.

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Mollusc genomes reveal variability in patterns of LTR-retrotransposons dynamics

Autor: Thomas-Bulle, Camille, Piednoël, Mathieu, Donnart, Tifenn, Filée, Jonathan, Jollivet, Didier, Bonnivard, Eric

Publikováno v: BMC Genomics
BMC Genomics, BioMed Central, 2018, 19, pp.821. ⟨10.1186/s12864-018-5200-1⟩
BMC Genomics, Vol 19, Iss 1, Pp 1-18 (2018)
BMC Genomics, 2018, 19, pp.821. ⟨10.1186/s12864-018-5200-1⟩
BMC Genomics, BioMed Central, 2018, 19 (1), ⟨10.1186/s12864-018-5200-1⟩

Background The three superfamilies of Long Terminal Repeat (LTR) retrotransposons are a widespread kind of transposable element and a major factor in eukaryotic genome evolution. In metazoans, recent studies suggested that Copia LTR-retrotransposons

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::70084b64c1c89ce57afe75c5f0b83d0f
https://hal.sorbonne-universite.fr/hal-01942417/file/s12864-018-5200-1.pdf

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Additional file 5: of Mollusc genomes reveal variability in patterns of LTR-retrotransposons dynamics

Autor: Thomas-Bulle, Camille, Piednoël, Mathieu, Donnart, Tifenn, Filée, Jonathan, Jollivet, Didier, Éric Bonnivard

Phylogenetic relationships among Gypsy clades. This tree is a simplified representation of Fig. 5, in which mollusc elements from a same clade are represented by compressed subtrees. All LTR-retrotransposon from a clade found in mollusc are depicted

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8e59ae526728b32cff992adbd9eca8a6

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Akademický článek

LTR-Retrotransposons in R. exoculata and Other Crustaceans: The Outstanding Success of GalEa-Like Copia Elements.

Autor: Piednoël, Mathieu^1,2, Donnart, Tifenn¹, Esnault, Caroline¹, Graça, Paula¹, Higuet, Dominique¹, Bonnivard, Eric¹ eric.bonnivard@upmc.fr

Publikováno v: PLoS ONE. Mar2013, Vol. 8 Issue 3, p1-14. 14p.

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Additional file 7: of Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi

Autor: Donnart, Tifenn, PiednoĂŤl, Mathieu, Higuet, Dominique, ĂRic Bonnivard

Phylogenetic relationships among GalEa retrotransposons. Neighbor-Joining analysis of RT/RNaseH amino acid sequences of GalEa elements and representative Copia clades previously defined in the Gypsy Database. Statistical support comes from non-parame

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::65e9f6cef59e9b1df4a155a900799b53

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Additional file 8: of Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi

Autor: Donnart, Tifenn, PiednoĂŤl, Mathieu, Higuet, Dominique, ĂRic Bonnivard

Comparison of methods used to estimate the proportion of GalEa elements among fungal Copia retrotransposons. We compared in pairs the three estimations of GalEa proportions among Copia based on the number of copies detected with LTRharvest, the numbe

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::98125e563c0fcd317896adfca062c42b

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Additional file 2: of Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi

Autor: Donnart, Tifenn, PiednoĂŤl, Mathieu, Higuet, Dominique, ĂRic Bonnivard

Phylogenetic relationships among fungal Copia families. Neighbor-Joining analysis of RT amino acid sequences of representative Copia families isolated with LTRharvest and all fungal Copia sequences available in RepBase. The 27 FunCo (Fungal Copia) cl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::69d5fbe5521abaa094dc24c00b7f5cdd

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Additional file 6: of Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi

Autor: Donnart, Tifenn, PiednoĂŤl, Mathieu, Higuet, Dominique, ĂRic Bonnivard

Charaterization of the extended Conserved Hairpin Site. (A) Local alignment of Tasti2, Tasti4 and Tasti5 sequences from Talaromyces stipitatus showing the different regions of the extended Conserved Hairpin Site (CHS). (B) Families in which different

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::55658345e61ef211e1039b72e08054f2

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Study of a clade of retrotransposon Copia : The GalEa, in eukaryotic genomes

Autor: Donnart, Tifenn

Publikováno v: Génétique animale. Université Pierre et Marie Curie-Paris VI, 2015. Français. ⟨NNT : 2015PA066017⟩

Transposable elements play a major role in the evolution of eukaryotic genomes. Knowing the distribution of transposable elements between different species within the same taxon is essential to study their dynamics and to better understand their role

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::358449901099338561bc101500ad06b4
https://tel.archives-ouvertes.fr/tel-01132413/document

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