Zobrazeno 1 - 10
of 41
pro vyhledávání: '"Donna Karolchik"'
Autor:
Brian T. Lee, Robert M. Kuhn, Christopher Eisenhart, Kate R. Rosenbloom, Cath Tyner, Donna Karolchik, Brian J. Raney, Jonathan Casper, David Gibson, Ann S. Zweig, Maximilian Haeussler, Jairo Navarro Gonzalez, Matthew L. Speir, Mark Diekhans, Luvina Guruvadoo, Galt P. Barber, W. James Kent, David Haussler, Joel Armstrong, Chris Villarreal, Ian T. Fiddes, Christopher Lee, Angie S. Hinrichs, Hiram Clawson
Publikováno v:
Nucleic acids research, vol 46, iss D1
Nucleic Acids Research
Nucleic Acids Research
The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis—12 assemblies and more than 28 tracks were added in the past
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a15f7cfc48ea2734282b08d6ae3a909b
https://escholarship.org/uc/item/7wz5n290
https://escholarship.org/uc/item/7wz5n290
Autor:
Jonathan Casper, Angie S. Hinrichs, David Haussler, Brooke Rhead, Robert M. Kuhn, Kate R. Rosenbloom, Brian J. Raney, W. James Kent, Ann S. Zweig, Matthew L. Speir, Donna Karolchik
Publikováno v:
Bioinformatics
Bioinformatics (Oxford, England), vol 32, iss 9
Bioinformatics (Oxford, England), vol 32, iss 9
Author(s): Hinrichs, Angie S; Raney, Brian J; Speir, Matthew L; Rhead, Brooke; Casper, Jonathan; Karolchik, Donna; Kuhn, Robert M; Rosenbloom, Kate R; Zweig, Ann S; Haussler, David; Kent, W James | Abstract: UnlabelledTwo new tools on the UCSC Genome
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d184250ef7d31379a096b35b7ff69157
http://europepmc.org/articles/PMC4848401
http://europepmc.org/articles/PMC4848401
Autor:
Rachel A. Harte, Angie S. Hinrichs, Karen H. Miga, Kate R. Rosenbloom, Benedict Paten, Timothy R. Dreszer, Brian J. Raney, Steven G. Heitner, Brian T. Lee, Mark Diekhans, Arian F.A. Smit, Ann S. Zweig, Jonathan Casper, Matthew L. Speir, Pauline A. Fujita, Luvina Guruvadoo, Donna Karolchik, Robert Hubley, Galt P. Barber, Robert M. Kuhn, Katrina Learned, Glenn Hickey, Chin H. Li, David Haussler, Ngan Nguyen, Hiram Clawson, W. James Kent, Joel Armstrong, Maximilian Haeussler
Publikováno v:
Nucleic Acids Research
Nucleic acids research, vol 43, iss Database issue
Nucleic acids research, vol 43, iss Database issue
Launched in 2001 to showcase the draft human genome assembly, the UCSC Genome Browser database (http://genome.ucsc.edu) and associated tools continue to grow, providing a comprehensive resource of genome assemblies and annotations to scientists and s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::643caf4cf335c4eea5dbd33d6be01408
http://europepmc.org/articles/PMC4383971
http://europepmc.org/articles/PMC4383971
Autor:
Cath Tyner, David Haussler, John Vivian, Kate R. Rosenbloom, Jonathan Casper, David Gibson, Maximilian Haeussler, Jairo Navarro Gonzalez, Galt P. Barber, Christopher Eisenhart, Ann S. Zweig, Matthew L. Speir, Christopher Lee, Robert M. Kuhn, Parisa Nejad, Luvina Guruvadoo, Mark Diekhans, Brian J. Raney, Angie S. Hinrichs, W. James Kent, Clayton M. Fischer, Donna Karolchik, Steve Heitner, Brian T. Lee, Chris Villarreal, Hiram Clawson
Publikováno v:
Nucleic Acids Research.
Since its 2001 debut, the University of California, Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu/) team has provided continuous support to the international genomics and biomedical communities through a web-based, open source platform des
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3b75ef259ed2c596d2472b885e4a1d70
https://doi.org/10.1093/nar/gkw1134
https://doi.org/10.1093/nar/gkw1134
Autor:
Andy Pohl, Venkat S. Malladi, Donna Karolchik, Maximilian Haeussler, Angie S. Hinrichs, Vanessa M. Kirkup, Laurence R. Meyer, Brian T. Lee, Matthew C. Wong, Brian J. Raney, Galt P. Barber, Luvina Guruvadoo, Mark Diekhans, Pauline A. Fujita, David Haussler, Robert M. Kuhn, Belinda Giardine, Greg Roe, Brooke Rhead, Cricket A. Sloan, Rachel A. Harte, Mary Goldman, Ann S. Zweig, Timothy R. Dreszer, Fan Hsu, Kate R. Rosenbloom, Steven G. Heitner, Hiram Clawson, Chin H. Li, Katrina Learned, Melissa S. Cline, W. James Kent
Publikováno v:
Nucleic Acids Research
The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a wide variety of organisms. The Browser is an integrated tool set for vi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e420c907f072d16bed609c185a23c6ed
https://doi.org/10.1093/nar/gks1048
https://doi.org/10.1093/nar/gks1048
Autor:
Galt P. Barber, Brooke Rhead, Brian J. Raney, Cricket A. Sloan, Greg Roe, Melissa S. Cline, Katrina Learned, Timothy R. Dreszer, David Haussler, Luvina Guruvadoo, Rachel A. Harte, Robert M. Kuhn, Matthew C. Wong, Ann S. Zweig, Chin H. Li, Angie S. Hinrichs, Fan Hsu, Laurence R. Meyer, Kate R. Rosenbloom, Andy Pohl, Mark Diekhans, Belinda Giardine, W. James Kent, Vanessa M. Kirkup, Hiram Clawson, Donna Karolchik, Pauline A. Fujita, Venkat S. Malladi, Mary Goldman
Publikováno v:
Nucleic Acids Research
The University of California Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a wide variety of organisms. The Browser is an integrated tool set for visualizi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dbb68e0e8577a0d32174f04453966a10
http://europepmc.org/articles/PMC3245018
http://europepmc.org/articles/PMC3245018
Autor:
Brooke Rhead, Cricket A. Sloan, Hiram Clawson, Robert M. Kuhn, Matthew C. Wong, Mark Diekhans, Ann S. Zweig, Galt P. Barber, Andy Pohl, Rachel A. Harte, Vanessa M. Kirkup, Brian J. Raney, Pauline A. Fujita, David Haussler, Donna Karolchik, Melissa S. Cline, Morgan Maddren, Kate R. Rosenbloom, Timothy R. Dreszer, Angie S. Hinrichs, Laurence R. Meyer, Jeffrey C. Long, W. James Kent, Katrina Learned, Mary Goldman, Venkat S. Malladi, Robert C. Gravell
Publikováno v:
Nucleic Acids Research
The Encyclopedia of DNA Elements (ENCODE) Consortium is entering its 5th year of production-level effort generating high-quality whole-genome functional annotations of the human genome. The past year has brought the ENCODE compendium of functional el
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0b519394f53ae32309c14636abcf08e
http://europepmc.org/articles/PMC3245183
http://europepmc.org/articles/PMC3245183
Autor:
W. James Kent, Brian J. Raney, Hiram Clawson, Maximilian Haeussler, Ann S. Zweig, Matthew L. Speir, Donna Karolchik, Jonathan Casper, Angie S. Hinrichs, David Haussler
Publikováno v:
Bioinformatics
Summary: Genome Browser in a Box (GBiB) is a small virtual machine version of the popular University of California Santa Cruz (UCSC) Genome Browser that can be run on a researcher's own computer. Once GBiB is installed, a standard web browser is used
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2347665cb1a9657e59199e0a05c3c12b
http://europepmc.org/articles/PMC4341066
http://europepmc.org/articles/PMC4341066
Autor:
Brooke Rhead, Brian J. Raney, Katrina Learned, W. James Kent, David Haussler, Donna Karolchik, Robert M. Kuhn, Pauline A. Fujita, Kayla E. Smith, Hiram Clawson, Vanessa M. Kirkup, Rachel A. Harte, Ann S. Zweig, Belinda Giardine, Mark Diekhans, Melissa S. Cline, Fan Hsu, Kate R. Rosenbloom, Mary Goldman, Angie S. Hinrichs, Andy Pohl, Timothy R. Dreszer, Antonio Coelho, Galt P. Barber, Laurence R. Meyer, Jennifer Hillman-Jackson, Chin H. Li
Publikováno v:
Nucleic Acids Research
The University of California, Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online access to a database of genomic sequence and annotation data for a wide variety of organisms. The Browser also has many tools for visualizing, comparing an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::51b3bde3a35aba76ac87c74ba10603e3
http://europepmc.org/articles/PMC3242726
http://europepmc.org/articles/PMC3242726
Publikováno v:
Bioinformatics
Summary: BigWig and BigBed files are compressed binary indexed files containing data at several resolutions that allow the high-performance display of next-generation sequencing experiment results in the UCSC Genome Browser. The visualization is impl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8ef52aecbe34ca329ab29f6abc7aec97
https://doi.org/10.1093/bioinformatics/btq351
https://doi.org/10.1093/bioinformatics/btq351