Zobrazeno 1 - 10
of 64
pro vyhledávání: '"Dongwan D Kang"'
Autor:
Matthew J Blow, Tyson A Clark, Chris G Daum, Adam M Deutschbauer, Alexey Fomenkov, Roxanne Fries, Jeff Froula, Dongwan D Kang, Rex R Malmstrom, Richard D Morgan, Janos Posfai, Kanwar Singh, Axel Visel, Kelly Wetmore, Zhiying Zhao, Edward M Rubin, Jonas Korlach, Len A Pennacchio, Richard J Roberts
Publikováno v:
PLoS Genetics, Vol 12, Iss 2, p e1005854 (2016)
DNA methylation acts in concert with restriction enzymes to protect the integrity of prokaryotic genomes. Studies in a limited number of organisms suggest that methylation also contributes to prokaryotic genome regulation, but the prevalence and prop
Externí odkaz:
https://doaj.org/article/611a8e3186b0460990c4d6a70850c22d
Publikováno v:
PLoS ONE, Vol 6, Iss 1, p e16161 (2011)
Tuberculosis (TB) is caused by the intracellular bacteria Mycobacterium tuberculosis, and kills more than 1.5 million people every year worldwide. Immunity to TB is associated with the accumulation of IFNγ-producing T helper cell type 1 (Th1) in the
Externí odkaz:
https://doaj.org/article/3ae7b1b9c526424d8d967b8fb906db71
Publikováno v:
Bioinformatics. 34:1321-1328
Motivation With the prevalent usage of microarray and massively parallel sequencing, numerous high-throughput omics datasets have become available in the public domain. Integrating abundant information among omics datasets is critical to elucidate bi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4ad98e397f652980c2a08e7476444b07
https://doi.org/10.1093/bioinformatics/btx765
https://doi.org/10.1093/bioinformatics/btx765
Autor:
Tanja Woyke, Daniel Barich, Joan L. Slonczewski, Rob Egan, Volkan Sevim, Dongwan D. Kang, Derek N. Macklin, Rachael M. Morgan-Kiss, Jeff Froula, Harrison Ho, Frederik Schulz, Wei Li, Zhong Wang, Kayla McCue, Shijie Yao, Rachel Orsini, Christopher J. Sedlacek, Jackie E. Shay
Classifying taxa, including those that have not previously been identified, is a key task in characterizing the microbial communities of under-described habitats, including permanently ice-covered lakes in the dry valleys of the Antarctic. Current su
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::033506eb5ab89f18b15a66df268b54c6
Publikováno v:
PeerJ
PeerJ, vol 7, iss 7
PeerJ, Vol 7, p e7359 (2019)
PeerJ, vol 7, iss 7
PeerJ, Vol 7, p e7359 (2019)
We previously reported on MetaBAT, an automated metagenome binning software tool to reconstruct single genomes from microbial communities for subsequent analyses of uncultivated microbial species. MetaBAT has become one of the most popular binning to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::394ffb32e440187385fecf92a06d905e
Publikováno v:
it - Information Technology. 58:133-139
High throughput next generation sequencing technologies have enabled cultivation-independent approaches to study microbial communities in environmental samples. To date much of functional metagenomics has been limited to the gene or pathway level. Re
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7639207967cd0707f9ff29c5e382e53c
https://doi.org/10.1515/itit-2016-0011
https://doi.org/10.1515/itit-2016-0011
Autor:
Ashley Shade, Amrita Pati, Stephanie Malfatti, Jeff Froula, Mary Ann Moran, Leong-Keat Chan, Ryan J. Newton, Matthew L. Bendall, Joel Martin, Stefan Bertilsson, Julien Tremblay, Patrick Schwientek, Sarah L. R. Stevens, Katherine D. McMahon, Wendy Schackwitz, Brian Bushnell, Rex R. Malmstrom, Susannah G. Tringe, Dongwan D. Kang
Publikováno v:
The ISME Journal
The ISME journal, vol 10, iss 7
Bendall, ML; Stevens, SLR; Chan, LK; Malfatti, S; Schwientek, P; Tremblay, J; et al.(2016). Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME Journal, 10(7), 1589-1601. doi: 10.1038/ismej.2015.241. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/546981sd
The ISME journal, vol 10, iss 7
Bendall, ML; Stevens, SLR; Chan, LK; Malfatti, S; Schwientek, P; Tremblay, J; et al.(2016). Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME Journal, 10(7), 1589-1601. doi: 10.1038/ismej.2015.241. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/546981sd
© 2016 International Society for Microbial Ecology. Multiple models describe the formation and evolution of distinct microbial phylogenetic groups. These evolutionary models make different predictions regarding how adaptive alleles spread through po
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a70566c8235085ca1cc9b2ce78833165
http://europepmc.org/articles/PMC4918448
http://europepmc.org/articles/PMC4918448
Autor:
Henning Seedorf, Jeff Froula, Peter H. Janssen, Sandra Kittelmann, Samuel Deutsch, Priya Soni, C. S. Pinares-Patiño, Feng Chen, Edward M. Rubin, Renee Atua, Weibing Shi, Christina Fan, Dong Li, John C. McEwan, Axel Visel, Carrie Sang, Christina D. Moon, Dragana Gagic, Graeme T. Attwood, Zhong Wang, Dongwan D. Kang, Sinead C. Leahy, William J. Kelly
Publikováno v:
Genome Research. 24:1517-1525
Ruminant livestock represent the single largest anthropogenic source of the potent greenhouse gas methane, which is generated by methanogenic archaea residing in ruminant digestive tracts. While differences between individual animals of the same bree
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::44c3780f58cf8d8e0dc45ddd3aa8fdeb
https://doi.org/10.1101/gr.168245.113
https://doi.org/10.1101/gr.168245.113
Autor:
Tyson A. Clark, Kelly M. Wetmore, Alexey Fomenkov, Richard D. Morgan, Edward M. Rubin, Jeff Froula, Janos Posfai, Kanwar Singh, Dongwan D. Kang, Chris Daum, Adam M. Deutschbauer, Zhiying Zhao, Roxanne Fries, Axel Visel, Matthew J. Blow, Jonas Korlach, Richard J. Roberts, Rex R. Malmstrom, Len A. Pennacchio
Publikováno v:
PLoS genetics, vol 12, iss 2
PLoS Genetics
PLoS Genetics, Vol 12, Iss 2, p e1005854 (2016)
Blow, MJ; Clark, TA; Daum, CG; Deutschbauer, AM; Fomenkov, A; Fries, R; et al.(2016). The Epigenomic Landscape of Prokaryotes. PLoS Genetics, 12(2). doi: 10.1371/journal.pgen.1005854. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/1qk9t49k
PLoS Genetics
PLoS Genetics, Vol 12, Iss 2, p e1005854 (2016)
Blow, MJ; Clark, TA; Daum, CG; Deutschbauer, AM; Fomenkov, A; Fries, R; et al.(2016). The Epigenomic Landscape of Prokaryotes. PLoS Genetics, 12(2). doi: 10.1371/journal.pgen.1005854. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/1qk9t49k
DNA methylation acts in concert with restriction enzymes to protect the integrity of prokaryotic genomes. Studies in a limited number of organisms suggest that methylation also contributes to prokaryotic genome regulation, but the prevalence and prop
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::169842049c0540d8dba44c82d225bd27
https://escholarship.org/uc/item/1qk9t49k
https://escholarship.org/uc/item/1qk9t49k
Autor:
Jose D. Herazo-Maya, Brenda Juan-Guardela, Dongwan D. Kang, Fernando J. Martinez, John Tedrow, Frank C. Sciurba, SungHwan Kim, Naftali Kaminski, George C. Tseng
Publikováno v:
BMC Genomics
Background The increased multi-omics information on carefully phenotyped patients in studies of complex diseases requires novel methods for data integration. Unlike continuous intensity measurements from most omics data sets, phenome data contain cli
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e6c2a7877517ace69e09ec27121bcec2
https://doi.org/10.1186/s12864-015-2170-4
https://doi.org/10.1186/s12864-015-2170-4