Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Dongmo Foumthuim CJ"'
Autor:
Dongmo Foumthuim Cj, Jan Brezovsky, Bartłomiej Surpeta, Sarkar Dk, Mandal N, Thirunavukarasu As, Nikhil Agrawal, Carlos Eduardo Sequeiros-Borja
Information regarding pathways through voids in biomolecules and their roles in ligand transport is critical to our understanding of the function of many biomolecules. Recently, the advent of high-throughput molecular dynamics simulations has enabled
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::05ee3adebbbfd38eb93f1eebd04fd28a
https://doi.org/10.1101/2021.06.01.445451
https://doi.org/10.1101/2021.06.01.445451
Autor:
Dongmo Foumthuim CJ; INFN, Sezione di Roma Tor Vergata, Via della Ricerca Scientifica 1, 00133 Roma, Italy.; Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari Venezia, Via Torino 155, 30172 Venezia, Italy. achille.giacometti@unive.it., Arcangeli T; Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari Venezia, Via Torino 155, 30172 Venezia, Italy. achille.giacometti@unive.it.; Dipartimento di Chimica, Materiali e Ingegneria Chimica 'Giulio Natta', Politecnico di Milano, Sede Leonardo Edificio 6, Piazza Leonardo da Vinci 32, I-20133 Milano, Italy., Škrbić T; Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari Venezia, Via Torino 155, 30172 Venezia, Italy. achille.giacometti@unive.it., Giacometti A; Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari Venezia, Via Torino 155, 30172 Venezia, Italy. achille.giacometti@unive.it.; European Centre for Living Technology (ECLT) Ca' Bottacin, Dorsoduro 3911, Calle Crosera, 30123 Venice, Italy.
Publikováno v:
Soft matter [Soft Matter] 2024 Aug 14; Vol. 20 (32), pp. 6507-6527. Date of Electronic Publication: 2024 Aug 14.
Autor:
Sequeiros-Borja C; International Institute of Molecular and Cell Biology, Warsaw 02-109, Poland.; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznań 61-614, Poland., Surpeta B; International Institute of Molecular and Cell Biology, Warsaw 02-109, Poland.; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznań 61-614, Poland., Thirunavukarasu AS; International Institute of Molecular and Cell Biology, Warsaw 02-109, Poland.; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznań 61-614, Poland., Dongmo Foumthuim CJ; National Institute of Nuclear Physics (INFN), Sezione di Roma Tor Vergata, Rome 00133, Italy., Marchlewski I; International Institute of Molecular and Cell Biology, Warsaw 02-109, Poland.; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznań 61-614, Poland., Brezovsky J; International Institute of Molecular and Cell Biology, Warsaw 02-109, Poland.; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznań 61-614, Poland.
Publikováno v:
Journal of chemical information and modeling [J Chem Inf Model] 2024 Aug 12; Vol. 64 (15), pp. 6014-6025. Date of Electronic Publication: 2024 Apr 26.
Rinmaker: a fast, versatile and reliable tool to determine residue interaction networks in proteins.
Autor:
Spanò A; Department of Environmental Science, Computer Science and Statistics, University Ca' Foscari of Venice, Via Torino 155, 30172, Venice, Italy., Fanton L; Department of Environmental Science, Computer Science and Statistics, University Ca' Foscari of Venice, Via Torino 155, 30172, Venice, Italy., Pizzolato D; Department of Environmental Science, Computer Science and Statistics, University Ca' Foscari of Venice, Via Torino 155, 30172, Venice, Italy., Moi J; Department of Molecular Science and Nanosystems, University Ca' Foscari of Venice, Via Torino 155, 30172, Venice, Italy., Vinci F; Department of Environmental Science, Computer Science and Statistics, University Ca' Foscari of Venice, Via Torino 155, 30172, Venice, Italy., Pesce A; Department of Environmental Science, Computer Science and Statistics, University Ca' Foscari of Venice, Via Torino 155, 30172, Venice, Italy., Dongmo Foumthuim CJ; Department of Molecular Science and Nanosystems, University Ca' Foscari of Venice, Via Torino 155, 30172, Venice, Italy., Giacometti A; Department of Molecular Science and Nanosystems, University Ca' Foscari of Venice, Via Torino 155, 30172, Venice, Italy.; European Centre for Living Technology (ECLT), Dorsoduro 3246, 30123, Venice, Italy., Simeoni M; Department of Environmental Science, Computer Science and Statistics, University Ca' Foscari of Venice, Via Torino 155, 30172, Venice, Italy. simeoni@unive.it.; European Centre for Living Technology (ECLT), Dorsoduro 3246, 30123, Venice, Italy. simeoni@unive.it.
Publikováno v:
BMC bioinformatics [BMC Bioinformatics] 2023 Sep 11; Vol. 24 (1), pp. 336. Date of Electronic Publication: 2023 Sep 11.
Autor:
Dongmo Foumthuim CJ; Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari di Venezia, Campus Scientifico, Edificio Alfa, via Torino 155, 30172 Venezia Mestre, Italy. cedrix.dongmo@unive.it., Giacometti A; Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari di Venezia, Campus Scientifico, Edificio Alfa, via Torino 155, 30172 Venezia Mestre, Italy. achille.giacometti@unive.it.; European Centre for Living Technology (ECLT) Ca Bottacin, Dorsoduro 3911, Calle Crosera 30123 Venice, Italy.
Publikováno v:
Physical chemistry chemical physics : PCCP [Phys Chem Chem Phys] 2023 Feb 08; Vol. 25 (6), pp. 4839-4853. Date of Electronic Publication: 2023 Feb 08.
Autor:
Moro G; Department of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30172, Venice, Italy; A-Sense Research Group, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium; NanoLab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium. Electronic address: giulia.moro@unive.it., Dongmo Foumthuim CJ; Department of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30172, Venice, Italy., Spinaci M; Department of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30172, Venice, Italy., Martini E; Department of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30172, Venice, Italy., Cimino D; Department of Environmental Sciences, Informatic and Statistics, Ca' Foscari University of Venice, Via Torino 155, 30172, Venice, Italy., Balliana E; Department of Environmental Sciences, Informatic and Statistics, Ca' Foscari University of Venice, Via Torino 155, 30172, Venice, Italy., Lieberzeit P; Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, Waehringer Strasse 38, A-1090 Vienna, Austria., Romano F; Department of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30172, Venice, Italy., Giacometti A; Department of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30172, Venice, Italy; European Centre for Living Technology (ECLT) Ca' Bottacin, 3911 Dorsoduro Calle Crosera, 30123, Venice, Italy., Campos R; A-Sense Research Group, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium; NanoLab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium., De Wael K; A-Sense Research Group, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium; NanoLab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium., Moretto LM; Department of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30172, Venice, Italy.
Publikováno v:
Analytica chimica acta [Anal Chim Acta] 2022 Apr 29; Vol. 1204, pp. 339740. Date of Electronic Publication: 2022 Mar 17.
Autor:
Brezovsky J; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, 61-614 Poznan, Poland.; International Institute of Molecular and Cell Biology in Warsaw, 02-109 Warsaw, Poland., Thirunavukarasu AS; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, 61-614 Poznan, Poland.; International Institute of Molecular and Cell Biology in Warsaw, 02-109 Warsaw, Poland., Surpeta B; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, 61-614 Poznan, Poland.; International Institute of Molecular and Cell Biology in Warsaw, 02-109 Warsaw, Poland., Sequeiros-Borja CE; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, 61-614 Poznan, Poland.; International Institute of Molecular and Cell Biology in Warsaw, 02-109 Warsaw, Poland., Mandal N; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, 61-614 Poznan, Poland.; International Institute of Molecular and Cell Biology in Warsaw, 02-109 Warsaw, Poland., Sarkar DK; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, 61-614 Poznan, Poland.; International Institute of Molecular and Cell Biology in Warsaw, 02-109 Warsaw, Poland., Dongmo Foumthuim CJ; Laboratory of Biomolecular Interactions and Transport, Department of Gene Expression, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, 61-614 Poznan, Poland.; International Institute of Molecular and Cell Biology in Warsaw, 02-109 Warsaw, Poland., Agrawal N; Latvian Institute of Organic Synthesis, LV-1006 Riga, Latvia.
Publikováno v:
Bioinformatics (Oxford, England) [Bioinformatics] 2022 Mar 04; Vol. 38 (6), pp. 1752-1753.
Autor:
Cantarutti C; Department of Medicine, University of Udine, Piazzale M. Kolbe 4, 33100 - Udine, Italy. cristina.cantarutti@uniud.it., Vargas MC; Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (Cinvestav), Unidad Mérida, Apartado Postal 73 'Cordemex', 97310, Mérida, Mexico., Dongmo Foumthuim CJ; Department of Medicine, University of Udine, Piazzale M. Kolbe 4, 33100 - Udine, Italy. cristina.cantarutti@uniud.it.; Department of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Campus Scientifico - Via Torino 155, 30172 Mestre, Italy., Dumoulin M; Centre for Protein Engineering, InBios, Department of Life Sciences, University of Liege, Liege, Belgium., La Manna S; Department of Pharmacy - University of Naples 'Federico II', 80134, Naples, Italy., Marasco D; Department of Pharmacy - University of Naples 'Federico II', 80134, Naples, Italy., Santambrogio C; Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza, Milan, Italy., Grandori R; Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza, Milan, Italy., Scoles G; Department of Medicine, University of Udine, Piazzale M. Kolbe 4, 33100 - Udine, Italy. cristina.cantarutti@uniud.it., Soler MA; Department of Medicine, University of Udine, Piazzale M. Kolbe 4, 33100 - Udine, Italy. cristina.cantarutti@uniud.it.; Italian Institute of Technology (IIT), Via Melen - 83, B Block, 16152 - Genova, Italy., Corazza A; Department of Medicine, University of Udine, Piazzale M. Kolbe 4, 33100 - Udine, Italy. cristina.cantarutti@uniud.it., Fortuna S; Department of Medicine, University of Udine, Piazzale M. Kolbe 4, 33100 - Udine, Italy. cristina.cantarutti@uniud.it.; Italian Institute of Technology (IIT), Via Melen - 83, B Block, 16152 - Genova, Italy.; Department of Chemical and Pharmaceutical Sciences, University of Trieste, Via L. Giorgieri 1, 34127 Trieste, Italy.
Publikováno v:
Physical chemistry chemical physics : PCCP [Phys Chem Chem Phys] 2021 Oct 20; Vol. 23 (40), pp. 23158-23172. Date of Electronic Publication: 2021 Oct 20.
Autor:
Dongmo Foumthuim CJ; Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari di Venezia, Campus Scientifico, Edificio Alfa, via Torino 155, 30170 Venezia Mestre, Italy. cedrix.dongmo@unive.it., Carrer M, Houvet M, Škrbić T, Graziano G, Giacometti A
Publikováno v:
Physical chemistry chemical physics : PCCP [Phys Chem Chem Phys] 2020 Nov 18; Vol. 22 (44), pp. 25848-25858.
Autor:
Fogolari F; Dipartimento di Scienze Matematiche, Informatiche e Fisiche (DIMF) , University of Udine , Via delle Scienze 206 , 33100 Udine , Italy.; Istituto Nazionale Biostrutture e Biosistemi , Viale medaglie d'Oro 305 , 00136 Roma , Italy., Maloku O; Dipartimento di Scienze Matematiche, Informatiche e Fisiche (DIMF) , University of Udine , Via delle Scienze 206 , 33100 Udine , Italy., Dongmo Foumthuim CJ; Dipartimento di Area Medica (DAME) , University of Udine , Piazzale Kolbe 4 , 33100 Udine , Italy., Corazza A; Istituto Nazionale Biostrutture e Biosistemi , Viale medaglie d'Oro 305 , 00136 Roma , Italy.; Dipartimento di Area Medica (DAME) , University of Udine , Piazzale Kolbe 4 , 33100 Udine , Italy., Esposito G; Dipartimento di Scienze Matematiche, Informatiche e Fisiche (DIMF) , University of Udine , Via delle Scienze 206 , 33100 Udine , Italy.; Istituto Nazionale Biostrutture e Biosistemi , Viale medaglie d'Oro 305 , 00136 Roma , Italy.; Science and Math Division , New York University at Abu Dhabi , PO Box 129188, Abu Dhabi , United Arab Emirates.
Publikováno v:
Journal of chemical information and modeling [J Chem Inf Model] 2018 Jul 23; Vol. 58 (7), pp. 1319-1324. Date of Electronic Publication: 2018 Jul 06.