Zobrazeno 1 - 10
of 168
pro vyhledávání: '"Dong Jun Yu"'
Publikováno v:
ACS Omega, Vol 9, Iss 2, Pp 2874-2883 (2024)
Externí odkaz:
https://doaj.org/article/7d975f559e66429fa3bfd993fdcc3f55
Akademický článek
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Akademický článek
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Autor:
Yi-Heng Zhu, Chengxin Zhang, Yan Liu, Gilbert S. Omenn, Peter L. Freddolino, Dong-Jun Yu, Yang Zhang
Publikováno v:
Genomics, Proteomics & Bioinformatics, Vol 20, Iss 5, Pp 1013-1027 (2022)
Gene Ontology (GO) has been widely used to annotate functions of genes and gene products. Here, we proposed a new method, TripletGO, to deduce GO terms of protein-coding and non-coding genes, through the integration of four complementary pipelines bu
Externí odkaz:
https://doaj.org/article/061fc05f2a7d42a2a2e88b55f177ef63
Autor:
Dong, Jun-Yu, Kitahama, Yasutaka, Fujita, Takatoshi, Adachi, Motoyasu, Shigeta, Yasuteru, Ishizaki, Akihito, Tanaka, Shigenori, Xiao, Ting-Hui, Goda, Keisuke
Publikováno v:
Journal of Chemical Physics; 1/28/2024, Vol. 160 Issue 4, p1-12, 12p
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 12, p e1010793 (2022)
Accurate identification of protein function is critical to elucidate life mechanisms and design new drugs. We proposed a novel deep-learning method, ATGO, to predict Gene Ontology (GO) attributes of proteins through a triplet neural-network architect
Externí odkaz:
https://doaj.org/article/74f7eeda86db429fa0637f8c7d4cd378
Publikováno v:
iScience, Vol 25, Iss 6, Pp 104425- (2022)
Summary: Ab initio protein structure prediction has been vastly boosted by the modeling of inter-residue contact/distance maps in recent years. We developed a new deep learning model, DeepPotential, which accurately predicts the distribution of a com
Externí odkaz:
https://doaj.org/article/aede0e7299fd42fb8261da466e30771d
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 19, Iss , Pp 6400-6416 (2021)
Transmembrane proteins have critical biological functions and play a role in a multitude of cellular processes including cell signaling, transport of molecules and ions across membranes. Approximately 60% of transmembrane proteins are considered as d
Externí odkaz:
https://doaj.org/article/b0f163c9e83043aea700aa019d16989f
Publikováno v:
In Expert Systems With Applications 15 July 2018 102:113-125
Publikováno v:
PLoS Computational Biology, Vol 17, Iss 3, p e1008865 (2021)
The topology of protein folds can be specified by the inter-residue contact-maps and accurate contact-map prediction can help ab initio structure folding. We developed TripletRes to deduce protein contact-maps from discretized distance profiles by en
Externí odkaz:
https://doaj.org/article/ebd691bba94f4b35990eb6e0cb86a802