Zobrazeno 1 - 10
of 119
pro vyhledávání: '"Dominique Lavenier"'
Autor:
Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier, Claire Lemaitre
Publikováno v:
PeerJ Computer Science, Vol 2, p e94 (2016)
Background Large scale metagenomic projects aim to extract biodiversity knowledge between different environmental conditions. Current methods for comparing microbial communities face important limitations. Those based on taxonomical or functional ass
Externí odkaz:
https://doaj.org/article/14a278f10cd14792be92c5fbc9623bb1
Autor:
Thomas C. Mathers, Yazhou Chen, Gemy Kaithakottil, Fabrice Legeai, Sam T. Mugford, Patrice Baa-Puyoulet, Anthony Bretaudeau, Bernardo Clavijo, Stefano Colella, Olivier Collin, Tamas Dalmay, Thomas Derrien, Honglin Feng, Toni Gabaldón, Anna Jordan, Irene Julca, Graeme J. Kettles, Krissana Kowitwanich, Dominique Lavenier, Paolo Lenzi, Sara Lopez-Gomollon, Damian Loska, Daniel Mapleson, Florian Maumus, Simon Moxon, Daniel R. G. Price, Akiko Sugio, Manuella van Munster, Marilyne Uzest, Darren Waite, Georg Jander, Denis Tagu, Alex C. C. Wilson, Cock van Oosterhout, David Swarbreck, Saskia A. Hogenhout
Publikováno v:
Genome Biology, Vol 18, Iss 1, Pp 1-1 (2017)
Externí odkaz:
https://doaj.org/article/101ed1f5d61d4993ab0fba72d87f2d24
Metagenomics offers a way to analyze biotopes at the genomic level and to reach functional and taxonomical conclusions. The bio-analyzes of large metagenomic projects face critical limitations: complex metagenomes cannot be assembled and the taxonomi
Externí odkaz:
http://arxiv.org/abs/1511.08317
Autor:
Roland Faure, Dominique Lavenier
Publikováno v:
Bioinformatics Advances. 2
Motivation Recently introduced, linked-read technologies, such as the 10× chromium system, use microfluidics to tag multiple short reads from the same long fragment (50–200 kb) with a small sequence, called a barcode. They are inexpensive and easy
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::cf3b481db873abd3479dfafa3b2446cb
https://doi.org/10.1093/bioadv/vbac068
https://doi.org/10.1093/bioadv/vbac068
Publikováno v:
ISTC 2021-11th International Symposium on Topics in Coding
ISTC 2021-11th International Symposium on Topics in Coding, Aug 2021, Montreal, Canada. pp.1-5
ISTC
ISTC 2021: 11th International Symposium on Topics in Coding
ISTC 2021: 11th International Symposium on Topics in Coding, Aug 2021, Montreal, Canada. pp.1-5, ⟨10.1109/ISTC49272.2021.9594243⟩
ISTC 2021-11th International Symposium on Topics in Coding, Aug 2021, Montreal, Canada. pp.1-5
ISTC
ISTC 2021: 11th International Symposium on Topics in Coding
ISTC 2021: 11th International Symposium on Topics in Coding, Aug 2021, Montreal, Canada. pp.1-5, ⟨10.1109/ISTC49272.2021.9594243⟩
International audience; This paper is dedicated to channel modeling and error-correction coding for DNA data storage with nanopore sequencing. We first propose a novel statistical model for DNA storage, which takes into account the memory within DNA
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::75c1663e9dd115f0e982a528afed923c
https://hal-imt-atlantique.archives-ouvertes.fr/hal-03337117
https://hal-imt-atlantique.archives-ouvertes.fr/hal-03337117
Publikováno v:
BIBM
BIBM 2020-IEEE International Conference on Bioinformatics and Biomedicine
BIBM 2020-IEEE International Conference on Bioinformatics and Biomedicine, Dec 2020, Virtual, South Korea. pp.1-4
BIBM 2020-IEEE International Conference on Bioinformatics and Biomedicine
BIBM 2020-IEEE International Conference on Bioinformatics and Biomedicine, Dec 2020, Virtual, South Korea. pp.1-4
In this paper, we introduce a new combination of software and hardware PIM (Process-in-Memory) architecture to accelerate the variant calling genomic process. PIM translates into bringing data intensive calculations directly where the data is: within
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9e5470a92733d096a932dcf8aff69857
https://doi.org/10.1109/bibm49941.2020.9313351
https://doi.org/10.1109/bibm49941.2020.9313351
Autor:
José Mauro Ribeiro, Raíssa D. Graciano, Rosiane P. Santos, Gabriel de Menezes Yazbeck, Rafael Sachetto Oliveira, Dominique Lavenier, Fausto Moreira da Silva Carmo
Publikováno v:
Scientific Reports
Scientific Reports, Vol 10, Iss 1, Pp 1-1 (2020)
Scientific Reports, Vol 10, Iss 1, Pp 1-1 (2020)
A broad panel of tens of thousands of microsatellite loci is unveiled for an endangered piracema (i.e. migratory) South American fish, Brycon orbignyanus. Once one of the main fisheries resources in the Platine Basin, it is now almost extinct in natu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1f3a163c9878ce28e1292a01951bc3c0
https://doi.org/10.1038/s41598-020-64336-2
https://doi.org/10.1038/s41598-020-64336-2
Autor:
Marie, Devaere, Sarrah, Boukthir, Séverine, Moullec, Emeline, Roux, Dominique, Lavenier, Ahmad, Faili, Samer, Kayal
Publikováno v:
Microbiology Resource Announcements
The frequency of infections due to Streptococcus pyogenes M/emm89 strains is increasing, presumably due to the emergence of a genetically distinct clone. We sequenced two emm89 strains isolated in Brittany, France, in 2009 and 2010 from invasive and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::c16973f713e99e709d070043769211e1
https://pubmed.ncbi.nlm.nih.gov/32165385
https://pubmed.ncbi.nlm.nih.gov/32165385
Publikováno v:
Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2020, 36 (17), pp.4568-4575. ⟨10.1093/bioinformatics/btaa527⟩
Bioinformatics, 2020, 36 (17), pp.4568-4575. ⟨10.1093/bioinformatics/btaa527⟩
Bioinformatics, Oxford University Press (OUP), 2020, 36 (17), pp.4568-4575. ⟨10.1093/bioinformatics/btaa527⟩
Bioinformatics, 2020, 36 (17), pp.4568-4575. ⟨10.1093/bioinformatics/btaa527⟩
Motivation Studies on structural variants (SVs) are expanding rapidly. As a result, and thanks to third generation sequencing technologies, the number of discovered SVs is increasing, especially in the human genome. At the same time, for several appl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5cdd0f2ea36708e3da80b4f7d70d0419
https://pubmed.ncbi.nlm.nih.gov/32437523
https://pubmed.ncbi.nlm.nih.gov/32437523
Publikováno v:
Journal of Bioinformatics and Computational Biology
Journal of Bioinformatics and Computational Biology, World Scientific Publishing, In press, pp.1-28. ⟨10.1142/S0219720019500148⟩
Journal of Bioinformatics and Computational Biology, In press, pp.1-28. ⟨10.1142/S0219720019500148⟩
Journal of Bioinformatics and Computational Biology, World Scientific Publishing, In press, pp.1-28. ⟨10.1142/S0219720019500148⟩
Journal of Bioinformatics and Computational Biology, In press, pp.1-28. ⟨10.1142/S0219720019500148⟩
International audience; This paper focuses on the last two stages of genome assembly, namely, scaffolding and gap-filling, and shows that they can be solved as part of a single optimization problem. Our approach is based on modeling genome assembly a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::23110c6b462b32386e3a426a28b9eb53
https://pubmed.ncbi.nlm.nih.gov/31288643
https://pubmed.ncbi.nlm.nih.gov/31288643