Systems Biology in ELIXIR: modelling in the spotlight:[version 1; peer review: 1 approved, 2 approved with reservations]

Autor: Martins dos Santos, Vitor, Anton, Mihail, Szomolay, Barbara, Ostaszewski, Marek, Arts, Ilja, Benfeitas, Rui, Dominguez del Angel, Victoria, Ferk, Polonca, Fey, Dirk, Goble, Carole, Golebiewski, Martin, Gruden, Kristina, Heil, Katharina F., Hermjakob, Henning, Kahlem, Pascal, Klapa, Maria I., Koehorst, Jasper, Kolodkin, Alexey, Kutmon, Martina, Leskošek, Brane, Moretti, Sébastien, Müller, Wolfgang, Pagni, Marco, Rezen, Tadeja, Rocha, Miguel, Rozman, Damjana, Šafránek, David, Sheriff, Rahuman S. Malik, Suarez diez, Maria, Van steen, Kristel, Westerhoff, Hans V, Wittig, Ulrike, Wolstencroft, Katherine, Zupanic, Anze, Evelo, Chris T., Hancock, John M.

Publikováno v: Martins dos Santos, V, Anton, M, Szomolay, B, Ostaszewski, M, Arts, I, Benfeitas, R, Dominguez del Angel, V, Ferk, P, Fey, D, Goble, C, Golebiewski, M, Gruden, K, Heil, K F, Hermjakob, H, Kahlem, P, Klapa, M I, Koehorst, J, Kolodkin, A, Kutmon, M, Leskošek, B, Moretti, S, Müller, W, Pagni, M, Rezen, T, Rocha, M, Rozman, D, Šafránek, D, Sheriff, R S M, Suarez diez, M, Van steen, K, Westerhoff, H V, Wittig, U, Wolstencroft, K, Zupanic, A, Evelo, C T & Hancock, J M 2022, ' Systems Biology in ELIXIR: modelling in the spotlight : [version 1; peer review: 1 approved, 2 approved with reservations] ', F1000Research, vol. 11, pp. 1265 . https://doi.org/10.12688/f1000research.126734.1

In this white paper, we describe the founding of a new ELIXIR Community - the Systems Biology Community - and its proposed future contributions to both ELIXIR and the broader community of systems biologists in Europe and worldwide. The Community beli

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3818::54f4d2840cec816afa9c064a95f3b0cb
https://doi.org/10.12688/f1000research.126734.1

ELIXIR-CONVERGE D1.1 Best Practices 1v0

Autor: Jareborg, Niclas, D'Anna, Flora, Hooft, Rob, Bösl, Korbinian, Kallberg, Yvonne, Faria, Daniel, Dominguez Del Angel, Victoria, Bianchini, Federico, Kronander, Elin, Englund, Marcus, Promponas, Vasilis, Vergoulis, Thanasis, Rossier, Grégoire, Leiby, Paulette, Adler, Priit, Fuchs, Siiri, Ahokas, Minna, Persson, Bengt, ELIXIR Data Management Network

The aim of this deliverable is to start capturing, collating, and disseminating the collective data management expertise that resides across the ELIXIR member Nodes. This first version of the guidelines aims to promote the knowledge sharing and capac

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5ba01b76369be55e6f21d92043876fab
https://doi.org/10.5281/zenodo.4501946

Towards FAIR principles for research software

Autor: Lamprecht, Anna-lena, Garcia, Leyla, Kuzak, Mateusz, Martinez, Carlos, Arcila, Ricardo, Martin Del Pico, Eva, Dominguez Del Angel, Victoria, Van De Sandt, Stephanie, Ison, Jon, Martinez, Paula Andrea, Mcquilton, Peter, Valencia, Alfonso, Harrow, Jennifer, Psomopoulos, Fotis, Gelpi, Josep Ll., Chue Hong, Neil, Goble, Carole, Capella-gutierrez, Salvador, Groth, Paul, Dumontier, Michel

Publikováno v: Lamprecht, A, Garcia, L, Kuzak, M, Martinez, C, Arcila, R, Martin Del Pico, E, Dominguez Del Angel, V, Van De Sandt, S, Ison, J, Martinez, P A, Mcquilton, P, Valencia, A, Harrow, J, Psomopoulos, F, Gelpi, J L, Chue Hong, N, Goble, C, Capella-gutierrez, S, Groth, P, Groth, P & Dumontier, M 2020, ' Towards FAIR principles for research software ', Data Science, vol. 3, no. 1, pp. 37-59 . https://doi.org/10.3233/DS-190026
Lamprecht, A-L, Garcia, L, Kuzak, M, Martinez, C, Arcila, R, Martin, E, Dominguez De Angel, V, van de Sandt, S, Ison, J, Martinez, P A, McQuilton, P, Valencia, A, Harrow, J, Psomopoulos, F, Gelpi, J L, Chue Hong, N, Goble, C & Capella-Gutierrez, S 2020, ' Towards FAIR principles for research software ', Data Science, vol. 3, no. 1, pp. 37-59 . https://doi.org/10.3233/DS-190026
Data Science

The FAIR Guiding Principles, published in 2016, aim to improve the findability, accessibility, interoperability and reusability of digital research objects for both humans and machines. The FAIR principles are also directly relevant to research softw

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::983a62b7a07bd2857b985425d79681b7
https://research.manchester.ac.uk/en/publications/0bea2ca4-c609-48a0-8c13-3a52ce174880

Evaluation of genome assembly software based on long reads

Autor: Bouri, Laurent, Lavenier, Dominique, Gibrat, Jean-Francois, Dominguez del Angel, Victoria Fabia

Publikováno v: [Research Report] France Genomique. 2017

During the last 30 years, Genomics has been revolutionized by the development of first- and second-generation sequencing (SGS) technologies, enabling the completion of many remarkable projects as the Human Genome Project, the 1000 Genomes Project and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7dbef4cd82d8fea0806fac9a9b776e6c
https://hal.inria.fr/hal-01481801

GNPAnnot Project 2010

Autor: Droc, Gaëtan, Guignon, Valentin, Baurens, Franc-Christophe, Jouffe, Vincent, Poiron, Claire, Lengellé, Juliette, Garsmeur, Olivier, Rouard, Mathieu, Bocs, Stéphanie, Alaux, Michael, Brigitte, Leatitia, Steinbach Samson, Delphine, Kimmel, Erik, Pommier, Cyril, Luyten, Isabelle, Terrier, Nancy, Leroy, Philippe, Quesneville, Hadi, Amselem, Joelle, Brault, Baptiste, Simon, Adeline, Dominguez del Angel, Victoria, Hoede, Claire, Fillinger, Sabine, Meyer, Michel, Rouxel, Thierry, Lebrun, Marc-Henri, Legeai, Fabrice, Kerbellec, Goulven, Collin, Olivier, Gauthier, Jean-Pierre, D'Alençon, Emmanuelle, Cousserans, François, Fournier, Philippe, Tagu, Denis

Publikováno v: Séminaire Génoplante, Pont-Royal en Provence, France, 29-31 mars 2010

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3631::4e7c8a58462250bcea26f24fcde27af8
http://agritrop.cirad.fr/556079/