Zobrazeno 1 - 10
of 21
pro vyhledávání: '"Dmytro Guzenko"'
Autor:
Trevor Winger, Vidhya Chellamuthu, Dmytro Guzenko, Mark Aloia, Shawn Barr, Susan DeFranco, Brandon Gorski, Faisal Mushtaq, Gary Garcia-Molina
Publikováno v:
Frontiers in Neurology, Vol 15 (2024)
IntroductionInsomnia causes serious adverse health effects and is estimated to affect 10–30% of the worldwide population. This study leverages personalized fine-tuned machine learning algorithms to detect insomnia risk based on questionnaire and lo
Externí odkaz:
https://doaj.org/article/05fc442f8ed44ca79d78e950885a39a1
Publikováno v:
PLoS Computational Biology, Vol 16, Iss 7, p e1007970 (2020)
Detection of protein structure similarity is a central challenge in structural bioinformatics. Comparisons are usually performed at the polypeptide chain level, however the functional form of a protein within the cell is often an oligomer. This fact,
Externí odkaz:
https://doaj.org/article/b567fa7776604fe1aa12e25bb981f82a
Autor:
Aleix Lafita, Spencer Bliven, Andreas Prlić, Dmytro Guzenko, Peter W Rose, Anthony Bradley, Paolo Pavan, Douglas Myers-Turnbull, Yana Valasatava, Michael Heuer, Matt Larson, Stephen K Burley, Jose M Duarte
Publikováno v:
PLoS Computational Biology, Vol 15, Iss 2, p e1006791 (2019)
BioJava is an open-source project that provides a Java library for processing biological data. The project aims to simplify bioinformatic analyses by implementing parsers, data structures, and algorithms for common tasks in genomics, structural biolo
Externí odkaz:
https://doaj.org/article/5c110558d5a8402a913e0beeea63fb8e
Autor:
Monica Sekharan, Jose M. Duarte, Brian P. Hudson, Zukang Feng, Ezra Peisach, Christine Zardecki, Andrej Sali, Maria Voigt, Sebastian Bittrich, Cole Christie, John D. Westbrook, Sutapa Ghosh, Chunxiao Bi, Li Chen, Dmytro Guzenko, Gregg V. Crichlow, Vladimir Guranovic, Yu-He Liang, Luigi Di Costanzo, Rachel Kramer Green, Kenneth Dalenberg, Yana Rose, Marina Zhuravleva, Jasmine Young, Alexander S. Rose, Harry Namkoong, Chenghua Shao, Sai J. Ganesan, David S. Goodsell, Charmi Bhikadiya, Shuchismita Dutta, Stephen K. Burley, Joan Segura, Catherine L. Lawson, Christopher Randle, Irina Persikova, Robert Lowe, Yi-Ping Tao
Publikováno v:
Nucleic Acids Research
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), the US data center for the global PDB archive and a founding member of the Worldwide Protein Data Bank partnership, serves tens of thousands of data depositors in
Autor:
Robert Lowe, Maria Voigt, Zukang Feng, Dmytro Guzenko, Chenghua Shao, Raul Sala, Cole H. Christie, Tara Kalro, Chunxiao Bi, Irina Periskova, Christine Zardecki, David S. Goodsell, John D. Westbrook, Shuchismita Dutta, Andreas Prlić, Charmi Bhikadiya, Monica Sekharan, Marina Zhuravleva, Harry Namkoong, Ezra Peisach, Peter W. Rose, Helen M. Berman, Alexander S. Rose, Stephen K. Burley, Yana Valasatava, Christopher Randle, Luigi Di Costanzo, Yi-Ping Tao, Lihua Tan, Jasmine Young, Sutapa Ghosh, Jesse Woo, Kenneth Dalenberg, Rachel Kramer Green, Huanwang Yang, Jose M. Duarte, Brian P. Hudson, Li Chen, Vladimir Guranovic, Yu-He Liang
Publikováno v:
Nucleic Acids Research
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, rcsb.org), the US data center for the global PDB archive, serves thousands of Data Depositors in the Americas and Oceania and makes 3D macromolecular structure data
Autor:
Masashi Yokochi, Ju Yaen Kim, Chenghua Shao, John M. Berrisford, Hongyang Yao, Miron Livny, Stephen Anyango, Abhik Mukhopadhyay, Romana Gáborová, Yi-Ping Tao, Monica Sekharan, Aleksandras Gutmanas, Jose M. Dana, Mandar Deshpande, Charmi Bhikadiya, Yannis Ioannidis, Pedro Romero, Jonathan R. Wedell, Eldon L. Ulrich, Gert-Jan Bekker, Chris Randle, Chunxiao Bi, Jeffrey C. Hoch, Nurul Nadzirin, Jaroslav Koča, Yumiko Kengaku, Jasmine Young, Cole Christie, John D. Westbrook, Naohiro Kobayashi, Alexander S. Rose, Sameer Velankar, David Sehnal, Lukáš Pravda, David R. Armstrong, Hasumi Cho, Genji Kurisu, Lora Mak, John L. Markley, Saqib Mir, Sutapa Ghosh, Ardan Patwardhan, Zukang Feng, Stephen K. Burley, Robert Lowe, David S. Goodsell, Hirofumi Suzuki, Maria Voigt, Paul Gane, Jose M. Duarte, Osman Salih, Irina Periskova, Matthew J. Conroy, Toshimichi Fujiwara, Yasuyo Ikegawa, Takahiro Kudou, Dimitri Maziuk, Typhaine Paysan-Lafosse, Brian P. Hudson, Christine Zardecki, Sreenath Nair, Gerard J. Kleywegt, Marina A. Zhuravleva, Shuchismita Dutta, Dmytro Guzenko, Kumaran Baskaran, Rachel Kramer Green, Ezra Peisach, Li Chen, Reiko Yamashita, Vladimir Guranovic, Yu-He Liang, Takeshi Iwata, Atsushi Nakagawa, Haruki Nakamura, Junko Sato, Radka Svobodová Vařeková, Helen M. Berman, Deepti Gupta, Luigi Di Costanzo, Mihaly Varadi, Yana Valasatava
Publikováno v:
Nucleic Acids Research
The Protein Data Bank (PDB) is the single global archive of experimentally determined three-dimensional (3D) structure data of biological macromolecules. Since 2003, the PDB has been managed by the Worldwide Protein Data Bank (wwPDB; wwpdb.org), an i
Autor:
Sergei Grudinin, Jose M. Duarte, Curtis D. Hodge, Dmytro Guzenko, John A. Tainer, Bohdan Monastyrskyy, Daniel J. Rosenberg, Susan E. Tsutakawa, Greg L. Hura, Krzysztof Fidelis, Andriy Kryshtafovych
Publikováno v:
Proteins-Structure, Function and Bioinformatics
Proteins-Structure, Function and Bioinformatics, 2019, Critical Assessment of Methods of Protein Structure Prediction (CASP) Special Issue, 87 (12), pp.1298-1314. ⟨10.1002/prot.25827⟩
Proteins, vol 87, iss 12
Proteins
Proteins-Structure, Function and Bioinformatics, Wiley, 2019, Critical Assessment of Methods of Protein Structure Prediction (CASP) Special Issue, 87 (12), pp.1298-1314. ⟨10.1002/prot.25827⟩
Proteins-Structure, Function and Bioinformatics, 2019, Critical Assessment of Methods of Protein Structure Prediction (CASP) Special Issue, 87 (12), pp.1298-1314. ⟨10.1002/prot.25827⟩
Proteins, vol 87, iss 12
Proteins
Proteins-Structure, Function and Bioinformatics, Wiley, 2019, Critical Assessment of Methods of Protein Structure Prediction (CASP) Special Issue, 87 (12), pp.1298-1314. ⟨10.1002/prot.25827⟩
International audience; Small angle X‐ray scattering (SAXS) measures comprehensive distance information on a protein's structure, which can constrain and guide computational structure prediction algorithms. Here, we evaluate structure predictions o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df5b99340cac2b7dd0145f7892a96b29
https://inria.hal.science/hal-02315292
https://inria.hal.science/hal-02315292
Publikováno v:
PLoS Computational Biology
PLoS Computational Biology, Vol 16, Iss 7, p e1007970 (2020)
PLoS Computational Biology, Vol 16, Iss 7, p e1007970 (2020)
Detection of protein structure similarity is a central challenge in structural bioinformatics. Comparisons are usually performed at the polypeptide chain level, however the functional form of a protein within the cell is often an oligomer. This fact,
Publikováno v:
Journal of structural biology. 209(1)
The assembly of intermediate filaments (IFs) including nuclear lamins is driven by specific interactions of the elementary coiled-coil dimers in both lateral and longitudinal direction. The assembly mode A
Publikováno v:
Proteins
We present the assembly category assessment in the 13th edition of the CASP community-wide experiment. For the second time, protein assemblies constitute an independent assessment category. Compared to the last edition we see a clear uptake in partic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::16f09634cdca953bc6298c45ec9c6660