Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Dmitriy, Ignatov"'
Publikováno v:
STAR Protocols, Vol 1, Iss 2, Pp 100046- (2020)
Summary: The structure of 5′ untranslated regions (5′ UTRs) of bacterial mRNAs often determines the fate of the transcripts. Using a dimethyl sulfate mutational profiling with sequencing (DMS-MaPseq) approach, we developed a protocol to generate
Externí odkaz:
https://doaj.org/article/578b032541ed4cb38ac6bd75b155c10d
Autor:
Dmitriy Ignatov, Karolis Vaitkevicius, Sylvain Durand, Laty Cahoon, Stefanie S. Sandberg, Xijia Liu, Birgitte H. Kallipolitis, Patrik Rydén, Nancy Freitag, Ciarán Condon, Jörgen Johansson
Publikováno v:
Cell Reports, Vol 30, Iss 12, Pp 4027-4040.e7 (2020)
Summary: Bacterial pathogens often employ RNA regulatory elements located in the 5′ untranslated regions (UTRs) to control gene expression. Using a comparative structural analysis, we examine the structure of 5′ UTRs at a global scale in the path
Externí odkaz:
https://doaj.org/article/6956d1ebe2074cab80d46cdd38ade958
Autor:
Elena G. Salina, Artem Grigorov, Yulia Skvortsova, Konstantin Majorov, Oksana Bychenko, Albina Ostrik, Nadezhda Logunova, Dmitriy Ignatov, Arseny Kaprelyants, Alexander Apt, Tatyana Azhikina
Publikováno v:
Frontiers in Cellular and Infection Microbiology, Vol 9 (2019)
Small non-coding RNAs play a significant role in bacterial adaptation to changing environmental conditions. We investigated the dynamics of expression of MTS1338, a small non-coding RNA of Mycobacterium tuberculosis, in the mouse model in vivo, regul
Externí odkaz:
https://doaj.org/article/cfc6724d335d456ca90af3f7ffc1c6ee
Autor:
Evgenii N. Tcyganov, Emilio Sanseviero, Douglas Marvel, Thomas Beer, Hsin-Yao Tang, Peter Hembach, David W. Speicher, Qianfei Zhang, Laxminarasimha R. Donthireddy, Ali Mostafa, Sabina Tsyganova, Vladimir Pisarev, Terri Laufer, Dmitriy Ignatov, Soldano Ferrone, Christiane Meyer, Hélène Maby-El Hajjami, Daniel E. Speiser, Sooner Altiok, Scott Antonia, Xiaowei Xu, Wei Xu, Cathy Zheng, Lynn M. Schuchter, Ravi K. Amaravadi, Tara C. Mitchell, Giorgos C. Karakousis, Zhe Yuan, Luis J. Montaner, Esteban Celis, Dmitry I. Gabrilovich
Publikováno v:
Cancer Cell
Cancer immunotherapy often depends on recognition of peptide epitopes by cytotoxic T lymphocytes (CTLs). The tumor microenvironment (TME) is enriched for peroxynitrite (PNT), a potent oxidant produced by infiltrating myeloid cells and some tumor cell
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::76784efda1078b089d38e93bcaa2cedb
https://hdl.handle.net/21.11116/0000-000D-0838-C
https://hdl.handle.net/21.11116/0000-000D-0838-C
Autor:
Dmitriy Ignatov, Sofia Malakho, Konstantin Majorov, Timofey Skvortsov, Alexander Apt, Tatyana Azhikina
Publikováno v:
PLoS ONE, Vol 8, Iss 9, p e74209 (2013)
Deep sequencing was implemented to study the transcriptional landscape of Mycobacterium avium. High-resolution transcriptome analysis identified the transcription start points for 652 genes. One third of these genes represented leaderless transcripts
Externí odkaz:
https://doaj.org/article/c358d95a3cac45a5bcfc416cfcaa66fa
Autor:
Jörgen Johansson, Ciarán Condon, Sylvain Durand, Laty A. Cahoon, Stefanie S. Sandberg, Birgitte H. Kallipolitis, Patrik Rydén, Karolis Vaitkevicius, Nancy E. Freitag, Xijia Liu, Dmitriy Ignatov
Publikováno v:
Cell Reports
Cell Reports, Elsevier Inc, 2020, 30 (12), pp.4027-4040.e7. ⟨10.1016/j.celrep.2020.03.006⟩
Cell Reports, Vol 30, Iss 12, Pp 4027-4040.e7 (2020)
Cell reports
Ignatov, D, Vaitkevicius, K, Durand, S, Cahoon, L, Sandberg, S S, Liu, X, Kallipolitis, B H, Rydén, P, Freitag, N, Condon, C & Johansson, J 2020, ' An mRNA-mRNA Interaction Couples Expression of a Virulence Factor and Its Chaperone in Listeria monocytogenes ', Cell Reports, vol. 30, no. 12, pp. 4027-4040 . https://doi.org/10.1016/j.celrep.2020.03.006
Cell Reports, Elsevier Inc, 2020, 30 (12), pp.4027-4040.e7. ⟨10.1016/j.celrep.2020.03.006⟩
Cell Reports, Vol 30, Iss 12, Pp 4027-4040.e7 (2020)
Cell reports
Ignatov, D, Vaitkevicius, K, Durand, S, Cahoon, L, Sandberg, S S, Liu, X, Kallipolitis, B H, Rydén, P, Freitag, N, Condon, C & Johansson, J 2020, ' An mRNA-mRNA Interaction Couples Expression of a Virulence Factor and Its Chaperone in Listeria monocytogenes ', Cell Reports, vol. 30, no. 12, pp. 4027-4040 . https://doi.org/10.1016/j.celrep.2020.03.006
SUMMARY Bacterial pathogens often employ RNA regulatory elements located in the 5′ untranslated regions (UTRs) to control gene expression. Using a comparative structural analysis, we examine the structure of 5′ UTRs at a global scale in the patho
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6bc9a81db2de201d1f6c472c7f78a40c
https://hal.archives-ouvertes.fr/hal-03004691
https://hal.archives-ouvertes.fr/hal-03004691
Autor:
Yulia Skvortsova, Tatyana L. Azhikina, Konstantin B. Majorov, Nadezhda Logunova, Arseny Kaprelyants, Artem Grigorov, Dmitriy Ignatov, Alexander S. Apt, Oksana S. Bychenko, Albina Ostrik, Elena G. Salina
Publikováno v:
Frontiers in Cellular and Infection Microbiology
Frontiers in Cellular and Infection Microbiology, Vol 9 (2019)
Frontiers in Cellular and Infection Microbiology, Vol 9 (2019)
Small non-coding RNAs play a significant role in bacterial adaptation to changing environmental conditions. We investigated the dynamics of expression of MTS1338, a small non-coding RNA ofMycobacterium tuberculosis, in the mouse modelin vivo, regulat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dc57ab3f73af812c4438d30c93927f7a
http://europepmc.org/articles/PMC6901956
http://europepmc.org/articles/PMC6901956
Autor:
Catarina M, Marinho, Patrícia T, Dos Santos, Birgitte H, Kallipolitis, Jörgen, Johansson, Dmitriy, Ignatov, Duarte N, Guerreiro, Pascal, Piveteau, Conor P, O'Byrne
Publikováno v:
RNA Biol
The facultative intracellular pathogen Listeria monocytogenes can persist and grow in a diverse range of environmental conditions, both outside and within its mammalian host. The alternative sigma factor Sigma B (σ(B)) plays an important role in thi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::306cd920aed457a13fe62ae4ae18685a
https://pubmed.ncbi.nlm.nih.gov/31242083
https://pubmed.ncbi.nlm.nih.gov/31242083
Autor:
Duarte N. Guerreiro, Conor P. O'Byrne, Patricia Teixeira Dos Santos, Dmitriy Ignatov, Birgitte H. Kallipolitis, Pascal Piveteau, Catarina M. Marinho, Jörgen Johansson
Publikováno v:
RNA Biology
RNA Biology, 2019, 16 (10), pp.1424-1437. ⟨10.1080/15476286.2019.1632776⟩
RNA Biology, Taylor & Francis, 2019, 16 (10), pp.1424-1437. ⟨10.1080/15476286.2019.1632776⟩
Marinho, C M, Dos Santos, P T, Kallipolitis, B H, Johansson, J, Ignatov, D, Guerreiro, D N, Piveteau, P & O’Byrne, C P 2019, ' The σ B-dependent regulatory sRNA Rli47 represses isoleucine biosynthesis in Listeria monocytogenes through a direct interaction with the ilvA transcript ', RNA Biology, vol. 16, no. 10, pp. 1424-1437 . https://doi.org/10.1080/15476286.2019.1632776
RNA Biology, 2019, 16 (10), pp.1424-1437. ⟨10.1080/15476286.2019.1632776⟩
RNA Biology, Taylor & Francis, 2019, 16 (10), pp.1424-1437. ⟨10.1080/15476286.2019.1632776⟩
Marinho, C M, Dos Santos, P T, Kallipolitis, B H, Johansson, J, Ignatov, D, Guerreiro, D N, Piveteau, P & O’Byrne, C P 2019, ' The σ B-dependent regulatory sRNA Rli47 represses isoleucine biosynthesis in Listeria monocytogenes through a direct interaction with the ilvA transcript ', RNA Biology, vol. 16, no. 10, pp. 1424-1437 . https://doi.org/10.1080/15476286.2019.1632776
International audience; The facultative intracellular pathogen Listeria monocytogenes can persist and grow in a diverse range of environmental conditions, both outside and within its mammalian host. The alternative sigma factor Sigma B (sigma(B)) pla
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::740862cb3cc5d093eb0e0e428b7b205f
https://hal.inrae.fr/hal-02911811
https://hal.inrae.fr/hal-02911811
Autor:
Dmitriy Ignatov, Nancy E. Freitag, Birgitte H. Kallipolitis, Jörgen Johansson, Xijia Liu, Patrik Rydén
Publikováno v:
SSRN Electronic Journal.
To understand physiological processes, it is vital to disclose the conformation of biological molecules inside living cells and correlate their structure with their function. Here, we describe a method, FUSE (5ʹ UTR Structure Elucidation), that we d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::87e3b382fe656fa1d400451aeaeaa0c0
https://doi.org/10.2139/ssrn.3238688
https://doi.org/10.2139/ssrn.3238688