Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Divya M. Sivaraman"'
Publikováno v:
Essays in Biochemistry
Recent efforts on the characterization of long non-coding RNAs (lncRNAs) revealed their functional roles in modulating diverse cellular processes. These include pluripotency maintenance, lineage commitment, carcinogenesis, and pathogenesis of various
Autor:
Chi Wai Yip, Chung-Chau Hon, Kayoko Yasuzawa, Divya M. Sivaraman, Jordan A. Ramilowski, Youtaro Shibayama, Saumya Agrawal, Anika V. Prabhu, Callum Parr, Jessica Severin, Yan Jun Lan, Josée Dostie, Andreas Petri, Hiromi Nishiyori-Sueki, Michihira Tagami, Masayoshi Itoh, Fernando López-Redondo, Tsukasa Kouno, Jen-Chien Chang, Joachim Luginbühl, Masaki Kato, Mitsuyoshi Murata, Wing Hin Yip, Xufeng Shu, Imad Abugessaisa, Akira Hasegawa, Harukazu Suzuki, Sakari Kauppinen, Ken Yagi, Yasushi Okazaki, Takeya Kasukawa, Michiel de Hoon, Piero Carninci, Jay W. Shin
Publikováno v:
Yip, C W, Hon, C-C, Yasuzawa, K, Sivaraman, D M, Ramilowski, J A, Shibayama, Y, Agrawal, S, Prabhu, A V, Parr, C, Severin, J, Lan, Y J, Dostie, J, Petri, A, Nishiyori-Sueki, H, Tagami, M, Itoh, M, López-Redondo, F, Kouno, T, Chang, J-C, Luginbühl, J, Kato, M, Murata, M, Yip, W H, Shu, X, Abugessaisa, I, Hasegawa, A, Suzuki, H, Kauppinen, S, Yagi, K, Okazaki, Y, Kasukawa, T, de Hoon, M, Carninci, P & Shin, J W 2022, ' Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types ', Cell reports, vol. 41, no. 13, 111893 . https://doi.org/10.1016/j.celrep.2022.111893
Within the scope of the FANTOM6 consortium, we perform a large-scale knockdown of 200 long non-coding RNAs (lncRNAs) in human induced pluripotent stem cells (iPSCs) and systematically characterize their roles in self-renewal and pluripotency. We find
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d15a652955f06a58b1c97bd8ea86768f
https://vbn.aau.dk/da/publications/57100123-2566-469a-9534-0fbe9f544bdc
https://vbn.aau.dk/da/publications/57100123-2566-469a-9534-0fbe9f544bdc
Autor:
Kalarickal V. Dileep, Minoru Yoshida, Divya M. Sivaraman, Akiko Nakata, Miyuki Kato-Murayama, Akihiro Ito, Kam Y. J. Zhang, Jay W. Shin, Mikako Shirouzu, Naoki Sakai, Kentaro Ihara
Publikováno v:
International Journal of Biological Macromolecules. 170:415-423
Alzheimer's disease (AD), a common chronic neurodegenerative disease, has become a major public health concern. Despite years of research, therapeutics for AD are limited. Overexpression of secretory glutaminyl cyclase (sQC) in AD brain leads to the
Autor:
Chi Wai Yip, Chung-Chau Hon, Kayoko Yasuzawa, Divya M. Sivaraman, Jordan A. Ramilowski, Youtaro Shibayama, Saumya Agrawal, Anika V. Prabhu, Callum Parr, Jessica Severin, Yan Jun Lan, Josée Dostie, Andreas Petri, Hiromi Nishiyori-Sueki, Michihira Tagami, Masayoshi Itoh, Fernando López-Redondo, Tsukasa Kouno, Jen-Chien Chang, Joachim Luginbühl, Masaki Kato, Mitsuyoshi Murata, Wing Hin Yip, Xufeng Shu, Imad Abugessaisa, Akira Hasegawa, Harukazu Suzuki, Sakari Kauppinen, Ken Yagi, Yasushi Okazaki, Takeya Kasukawa, Michiel de Hoon, Piero Carninci, Jay W. Shin
SummaryWithin the scope of FANTOM6 consortium, we perform a large-scale knockdown of 200 long non-coding RNAs (lncRNAs) in human induced pluripotent stem (iPS) cells, and systematically characterize their roles in self-renewal and pluripotency. We fi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::29fd88dee71f6b889c09d424094e76b2
https://doi.org/10.1101/2022.02.16.480297
https://doi.org/10.1101/2022.02.16.480297
Autor:
Claudio Schneider, Malte Thodberg, Akira Hasegawa, Haruhiko Koseki, Saumya Agrawal, Harukazu Suzuki, Carlo Vittorio Cannistraci, Yulia A. Medvedeva, Bogumil Kaczkowski, Jen Chien Chang, Youtaro Shibayama, Chi Wai Yip, Ivan Antonov, Takahiro Suzuki, Jayson Harshbarger, Mariola Kurowska-Stolarska, Luigi Marchionni, Leonie Roos, Chikashi Terao, Supat Thongjuea, Melissa Cardon, Ferenc Müller, Christopher J. F. Cameron, Hideya Kawaji, Naoto Kondo, Vsevolod J. Makeev, Alessandro Bonetti, Josée Dostie, Reto Guler, Kazuhiro R. Nitta, Shuhei Noguchi, Jasmine Li, Altuna Akalin, Michiel J. L. de Hoon, Nicholas J. Parkinson, Emily Kawabata, Chung-Chau Hon, Albin Sandelin, Tsugumi Kawashima, Callum J.C. Parr, Roberto Verardo, Aditi Kanhere, Roderic Guigó, Ivan V. Kulakovskiy, Igor Ulitsky, Pillay Sanjana, S. Thomas Kelly, Michael M. Hoffman, Yasushi Okazaki, Boris Lenhard, Yari Ciani, Andreas Lennartsson, Vidisha Tripathi, Imad Abugessaisa, Erik Arner, Denis Paquette, Ramil N. Nurtdinov, Robert Young, Chinatsu Yamamoto, Ken Yagi, Jordan A. Ramilowski, Alistair R. R. Forrest, Kayoko Yasuzawa, Aki Minoda, Jessica Severin, Peter Heutink, Norihito Hayatsu, Hiromi Nishiyori, Frank Brombacher, Tsukasa Kouno, Juha Kere, Lusy Handoko, J Kenneth Baillie, Andrew T. Kwon, Howard Y. Chang, Masayoshi Itoh, Yuki Hasegawa, Sakari Kauppinen, Andreas Petri, Ching Ooi, Luca Ducoli, Kosuke Hashimoto, Suzannah C. Szumowski, Tetsuro Hirose, Ryan Cardenas, Patrizia Rizzu, Eddie Luidy Imada, Colin A. Semple, Anton Kratz, Valerio Orlando, Alexander V. Favorov, Martin S. Taylor, Takeya Kasukawa, Joachim Luginbühl, Divya M. Sivaraman, Piero Carninci, Fernando López-Redondo, Hidemasa Bono, Yukihiko Noro, Marina Lizio, Beatrice Borsari, Mitsuyoshi Murata, Juliette Gimenez, Mickaël Mendez, Diego Fernando Sánchez Martinez, Diego Garrido, Michihira Tagami, Manuel Muñoz-Aguirre, Noa Gil, Shiori Maeda, John F. Ouyang, Jeffrey T. Leek, Alexandre Fort, Miki Kojima, Owen J. L. Rackham, Ilya E. Vorontsov, Jay W. Shin
Publikováno v:
Genome Res
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1da539fc9c0c9b9e978923d3c30cbf64
https://europepmc.org/articles/PMC7545137/
https://europepmc.org/articles/PMC7545137/
Autor:
Jayson Harshbarger, Hideya Kawaji, Diego Garrido, Michiel J. L. de Hoon, Tsugumi Kawashima, Lusy Handoko, Masayoshi Itoh, John F. Ouyang, Michihira Tagami, Kosuke Hashimoto, Andreas Petri, Patrizia Rizzu, Christopher J. F. Cameron, Tetsuro Hirose, Marina Lizio, Beatrice Borsari, Robert Young, Vidisha Tripathi, Chung-Chau Hon, Joachim Luginbühl, Ryan Cardenas, Jasmine Li Ching Ooi, Chikashi Terao, Vsevolod J. Makeev, Aki Minoda, Colin A. Semple, Alexander V. Favorov, Yasushi Okazaki, Kazuhiro R. Nitta, Mitsuyoshi Murata, Juha Kere, Harukazu Suzuki, Bogumil Kaczkowski, Fernando López-Redondo, Ivan Antonov, Mickaël Mendez, Diego Fernando Sánchez Martinez, Michael M. Hoffman, Chi Wai Yip, Imad Abugessaisa, Pillay Sanjana, Sakari Kauppinen, Erik Arner, Denis Paquette, Norihito Hayatsu, Ramil N. Nurtdinov, Mariola Kurowska-Stolarska, Luigi Marchionni, Takahiro Suzuki, Claudio Schneider, J Kenneth Baillie, Andrew T. Kwon, Saumya Agrawal, Carlo Vittorio Cannistraci, Roberto Verardo, Suzannah C. Szumowski, Frank Brombacher, Tsukasa Kouno, Boris Lenhard, Noa Gil, Manuel Muñoz-Aguirre, Shiori Maeda, Luca Ducoli, Emily Kawabata, Valerio Orlando, Leonie Roos, Divya M. Sivaraman, Youtaro Shibayama, Supat Thongjuea, Piero Carninci, Kayoko Yasuzawa, Jeffrey T. Leek, Alexandre Fort, Hidemasa Bono, Peter Heutink, Takeya Kasukawa, Alessandro Bonetti, Jen-Chien Chang, Josée Dostie, Naoto Kondo, Ferenc Müller, Nicholas J. Parkinson, Haruhiko Koseki, Malte Thodberg, Callum J.C. Parr, Anton Kratz, Miki Kojima, Reto Guler, Jordan A. Ramilowski, Alistair R. R. Forrest, Owen J. L. Rackham, Igor Ulitsky, Yari Ciani, Howard Y. Chang, Roderic Guigó, Jay W. Shin, Andreas Lennartsson, Ivan V. Kulakovskiy, Jessica Severin, Ilya E. Vorontsov, Melissa Cardon, Ken Yagi, Chinatsu Yamamoto, Yukihiko Noro, Juliette Gimenez, Shuhei Noguchi, Yuki Hasegawa, Eddie Luidy Imada, Martin S. Taylor, Yulia A. Medvedeva, Altuna Akalin, Albin Sandelin, Aditi Kanhere, S. Thomas Kelly, Hiromi Nishiyori, Akira Hasegawa
Publikováno v:
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C JF, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, López-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Sánchez Martinez, D F, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research, vol. 30, no. 7, pp. 1060-1072 . https://doi.org/10.1101/gr.254219.119
Genome Research
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, López-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Sánchez Martinez, D F, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research, vol. 30, pp. 1060-1072 . https://doi.org/10.1101/gr.254219.119
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, López-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Sánchez Martinez, D F, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research . https://doi.org/10.1101/gr.254219.119
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, Lopez-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Martinez, D F S, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research, vol. 30, no. 7, pp. 1060-1072 . https://doi.org/10.1101/gr.254219.119
Genome Res
Genome research 30(7), 1060-1072 (2020). doi:10.1101/gr.254219.119
Genome Research
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, López-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Sánchez Martinez, D F, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research, vol. 30, pp. 1060-1072 . https://doi.org/10.1101/gr.254219.119
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, López-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Sánchez Martinez, D F, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research . https://doi.org/10.1101/gr.254219.119
Ramilowski, J A, Yip, C W, Agrawal, S, Chang, J-C, Ciani, Y, Kulakovskiy, I V, Mendez, M, Ooi, J L C, Ouyang, J F, Parkinson, N, Petri, A, Roos, L, Severin, J, Yasuzawa, K, Abugessaisa, I, Akalin, A, Antonov, I V, Arner, E, Bonetti, A, Bono, H, Borsari, B, Brombacher, F, Cameron, C J F, Cannistraci, C V, Cardenas, R, Cardon, M, Chang, H, Dostie, J, Ducoli, L, Favorov, A, Fort, A, Garrido, D, Gil, N, Gimenez, J, Guler, R, Handoko, L, Harshbarger, J, Hasegawa, A, Hasegawa, Y, Hashimoto, K, Hayatsu, N, Heutink, P, Hirose, T, Imada, E L, Itoh, M, Kaczkowski, B, Kanhere, A, Kawabata, E, Kawaji, H, Kawashima, T, Kelly, S T, Kojima, M, Kondo, N, Koseki, H, Kouno, T, Kratz, A, Kurowska-Stolarska, M, Kwon, A T J, Leek, J, Lennartsson, A, Lizio, M, Lopez-Redondo, F, Luginbühl, J, Maeda, S, Makeev, V J, Marchionni, L, Medvedeva, Y A, Minoda, A, Müller, F, Muñoz-Aguirre, M, Murata, M, Nishiyori, H, Nitta, K R, Noguchi, S, Noro, Y, Nurtdinov, R, Okazaki, Y, Orlando, V, Paquette, D, Parr, C J C, Rackham, O J L, Rizzu, P, Martinez, D F S, Sandelin, A, Sanjana, P, Semple, C A M, Shibayama, Y, Sivaraman, D M, Suzuki, T, Szumowski, S C, Tagami, M, Taylor, M S, Terao, C, Thodberg, M, Thongjuea, S, Tripathi, V, Ulitsky, I, Verardo, R, Vorontsov, I E, Yamamoto, C, Young, R S, Baillie, J K, Forrest, A R R, Guigó, R, Hoffman, M M, Hon, C C, Kasukawa, T, Kauppinen, S, Kere, J, Lenhard, B, Schneider, C, Suzuki, H, Yagi, K, de Hoon, M J L, Shin, J W & Carninci, P 2020, ' Functional annotation of human long noncoding RNAs via molecular phenotyping ', Genome Research, vol. 30, no. 7, pp. 1060-1072 . https://doi.org/10.1101/gr.254219.119
Genome Res
Genome research 30(7), 1060-1072 (2020). doi:10.1101/gr.254219.119
Long noncoding RNAs (lncRNAs) constitute the majority of transcripts in the mammalian genomes, and yet, their functions remain largely unknown. As part of the FANTOM6 project, we systematically knocked down the expression of 285 lncRNAs in human derm
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9cf2df2c4fb7df1b0612e3c14c9242a6
https://vbn.aau.dk/da/publications/9945d8a2-24bb-4411-ada7-c0664ae247f1
https://vbn.aau.dk/da/publications/9945d8a2-24bb-4411-ada7-c0664ae247f1
Autor:
Jose D Aguilera, Shai Melcer, Binyamin Kaffe, Eran Meshorer, Divya M. Sivaraman, Sharon Schlesinger, Tommy Kaplan
Publikováno v:
Nucleic Acids Research
Histone variants and their chaperones are key regulators of eukaryotic transcription, and are critical for normal development. The histone variant H3.3 has been shown to play important roles in pluripotency and differentiation, and although its genom
Publikováno v:
Non-coding RNA Research
Non-coding RNA Research, Vol 2, Iss 1, Pp 74-82 (2017)
Non-coding RNA Research, Vol 2, Iss 1, Pp 74-82 (2017)
In mammals, short (mi-) and long non-coding (lnc) RNAs are immensely abundant and they are proving to be more functional than ever before. Particularly in cell reprogramming, non-coding RNAs are essential to establish the pluripotent network and are
Autor:
Howard Y. Chang, Manuel Muñoz-Aguirre, Roderic Guigó, Andreas Lennartsson, Chinatsu Yamamoto, Robert Young, Ramil N. Nurtdinov, Jasmine Li Ching Ooi, Christopher J. F. Cameron, Andreas Petri, Valerio Orlando, Tetsuro Hirose, Vidisha Tripathi, Tsugumi Kawashima, Joachim Luginbühl, Ilya E. Vorontsov, Diego Garrido, Jeffrey T. Leek, Alexandre Fort, Ryan Cardenas, Colin A. Semple, Aki Minoda, Takeya Kasukawa, Michiel J. L. de Hoon, Alexander V. Favorov, Peter Heutink, Harukazu Suzuki, Jordan A. Ramilowski, Alistair R. R. Forrest, Michihira Tagami, Imad Abugessaisa, Malte Thodberg, J Kenneth Baillie, Andrew T. Kwon, Juha Kere, Ivan V. Kulakovskiy, Jen-Chien Chang, Yuki Hasegawa, Melissa Cardon, Kazuhiro R. Nitta, John F. Ouyang, Jay W. Shin, Noa Gil, Jessica Severin, Reto Guler, Shiori Maeda, Eddie Luidy Imada, Emily Kawabata, Sakari Kauppinen, Hideya Kawaji, Pillay Sanjana, Miki Kojima, Yulia A. Medvedeva, Igor Ulitsky, Suzannah C. Szumowski, Martin S. Taylor, Michael M. Hoffman, Denis Paquette, Yari Ciani, Yukihiko Noro, S. Thomas Kelly, Mickaël Mendez, Diego Fernando Sánchez Martinez, Lusy Handoko, Jayson Harshbarger, Roberto Verardo, Owen J. L. Rackham, Bogumil Kaczkowski, Ivan Antonov, Frank Brombacher, Akira Hasegawa, Tsukasa Kouno, Fernando López-Redondo, Mariola Kurowska-Stolarska, Luigi Marchionni, Supat Thongjuea, N. Hayatsu, Ken Yagi, Juliette Gimenez, Anton Kratz, Hiromi Nishiyori, Shuhei Noguchi, Kayoko Yasuzawa, Chi Wai Yip, Chung-Chau Hon, Altuna Akalin, Albin Sandelin, Aditi Kanhere, Marina Lizio, Beatrice Borsari, Chikashi Terao, Vsevolod J. Makeev, Luca Ducoli, Alessandro Bonetti, Josée Dostie, Divya M. Sivaraman, Masayoshi Itoh, Piero Carninci, Hidemasa Bono, Erik Arner, Kosuke Hashimoto, Yasushi Okazaki, Patrizia Rizzu, Mitsuyoshi Murata, Callum J.C. Parr, Boris Lenhard, Ferenc Müller, Claudio Schneider, Youtaro Shibayama, Saumya Agrawal, Carlo Vittorio Cannistraci, Leonie Roos, Naoto Kondo, Nicholas J. Parkinson, Haruhiko Koseki, Takahiro Suzuki
Long non-coding RNAs (lncRNAs) constitute the majority of transcripts in the mammalian genomes and yet, their functions remain largely unknown. We systematically knockdown 285 lncRNAs expression in human dermal fibroblasts and quantified cellular gro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4a46b53a4c59f5aa48e139d767d36993
Autor:
Divya M. Sivaraman, Piero Carninci, Joachim Luginbühl, Rei Nakano, Thomas E. Chater, Charles Plessy, Filip Roudnicky, Mami Kishima, Jay W. Shin, Tsukasa Kouno
SummaryThe conversion of cell fates is controlled by hierarchical gene regulatory networks (GRNs) that induce remarkable alterations in cellular and transcriptome states. The identification of key regulators within these networks from myriad of candi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0f7aa56ed53bb2534d6e1954fa3e5fbb
https://doi.org/10.1101/600239
https://doi.org/10.1101/600239