An Expandable Informatics Framework for Enhancing Central Cancer Registries with Digital Pathology Specimens, Computational Imaging Tools, and Advanced Mining Capabilities.

Autor: Foran DJ; Center for Biomedical Informatics, Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, USA.; Department of Pathology and Laboratory Medicine, Rutgers-Robert Wood Johnson Medical School, Piscataway, NJ, USA., Durbin EB; Kentucky Cancer Registry, Markey Cancer Center, University of Kentucky, Lexington, KY, USA.; Division of Biomedical Informatics, Department of Internal Medicine, College of Medicine, Lexington, KY, USA., Chen W; Center for Biomedical Informatics, Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, USA., Sadimin E; Center for Biomedical Informatics, Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, USA.; Department of Pathology and Laboratory Medicine, Rutgers-Robert Wood Johnson Medical School, Piscataway, NJ, USA., Sharma A; Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, GA, USA., Banerjee I; Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, GA, USA., Kurc T; Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, USA., Li N; Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, GA, USA., Stroup AM; New Jersey State Cancer Registry, Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, USA., Harris G; New Jersey State Cancer Registry, Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, USA., Gu A; Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, GA, USA., Schymura M; New York State Cancer Registry, New York State Department of Health, Albany, NY, USA., Gupta R; Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, USA., Bremer E; Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, USA., Balsamo J; Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, USA., DiPrima T; Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, USA., Wang F; Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, USA., Abousamra S; Department of Computer Science, Stony Brook University, Stony Brook, NY, USA., Samaras D; Department of Computer Science, Stony Brook University, Stony Brook, NY, USA., Hands I; Division of Biomedical Informatics, Department of Internal Medicine, College of Medicine, Lexington, KY, USA., Ward K; Georgia State Cancer Registry, Georgia Department of Public Health, Atlanta, GA, USA., Saltz JH; Department of Biomedical Informatics, Stony Brook University, Stony Brook, NY, USA.

Publikováno v: Journal of pathology informatics [J Pathol Inform] 2022 Jan 05; Vol. 13, pp. 5. Date of Electronic Publication: 2022 Jan 05 (Print Publication: 2022).

Keratin 17 modulates the immune topography of pancreatic cancer.

Autor: Delgado-Coka, Lyanne^1,2 (AUTHOR), Horowitz, Michael¹ (AUTHOR), Torrente-Goncalves, Mariana¹ (AUTHOR), Roa-Peña, Lucia^1,3 (AUTHOR), Leiton, Cindy V.¹ (AUTHOR), Hasan, Mahmudul⁴ (AUTHOR), Babu, Sruthi¹ (AUTHOR), Fassler, Danielle¹ (AUTHOR), Oentoro, Jaymie¹ (AUTHOR), Bai, Ji-Dong K¹ (AUTHOR), Petricoin III, Emanuel F.^5,6 (AUTHOR), Matrisian, Lynn M.⁷ (AUTHOR), Blais, Edik Matthew⁶ (AUTHOR), Marchenko, Natalia¹ (AUTHOR), Allard, Felicia D.⁸ (AUTHOR), Jiang, Wei⁹ (AUTHOR), Larson, Brent¹⁰ (AUTHOR), Hendifar, Andrew¹⁰ (AUTHOR), Chen, Chao¹¹ (AUTHOR), Abousamra, Shahira⁴ (AUTHOR)

Publikováno v: Journal of Translational Medicine. 5/10/2024, Vol. 22 Issue 1, p1-16. 16p.

A Containerized Software System for Generation, Management, and Exploration of Features from Whole Slide Tissue Images.

Autor: Saltz J; Department of Biomedical Informatics, Stony Brook University, Stony Brook, New York. joel.saltz@stonybrookmedicine.edu., Sharma A; Department of Biomedical Informatics, Emory University, Atlanta, Georgia., Iyer G; Department of Biomedical Informatics, Emory University, Atlanta, Georgia., Bremer E; Department of Biomedical Informatics, Stony Brook University, Stony Brook, New York., Wang F; Department of Biomedical Informatics, Stony Brook University, Stony Brook, New York., Jasniewski A; Department of Biomedical Informatics, Stony Brook University, Stony Brook, New York., DiPrima T; Department of Biomedical Informatics, Stony Brook University, Stony Brook, New York., Almeida JS; Department of Biomedical Informatics, Stony Brook University, Stony Brook, New York., Gao Y; Department of Biomedical Informatics, Stony Brook University, Stony Brook, New York., Zhao T; Department of Biomedical Informatics, Stony Brook University, Stony Brook, New York.; Department of Pathology, Stony Brook University, Stony Brook, New York., Saltz M; Department of Radiology, Stony Brook University, Stony Brook, New York., Kurc T; Department of Biomedical Informatics, Stony Brook University, Stony Brook, New York.; Scientific Data Group, Oak Ridge National Laboratory, Oak Ridge, Tennessee.

Publikováno v: Cancer research [Cancer Res] 2017 Nov 01; Vol. 77 (21), pp. e79-e82.

Standardizing digital biobanks: integrating imaging, genomic, and clinical data for precision medicine.

Autor: Brancato, Valentina¹ (AUTHOR), Esposito, Giuseppina^2,3 (AUTHOR), Coppola, Luigi¹ (AUTHOR), Cavaliere, Carlo¹ (AUTHOR), Mirabelli, Peppino⁴ (AUTHOR), Scapicchio, Camilla⁵ (AUTHOR), Borgheresi, Rita⁵ (AUTHOR), Neri, Emanuele⁵ (AUTHOR), Salvatore, Marco¹ (AUTHOR), Aiello, Marco¹ (AUTHOR) marco.aiello@synlab.it

Publikováno v: Journal of Translational Medicine. 2/5/2024, Vol. 22 Issue 1, p1-28. 28p.

Hierarchical nucleus segmentation in digital pathology images.

Autor: Gao Y; Department of Biomedical Informatics, Stony Brook University, NY, U.S.A; Department of Computer Science, Stony Brook University, NY, U.S.A; Department of Applied Mathematics & Statistics, Stony Brook University, NY, U.S.A., Ratner V; Department of Computer Science, Stony Brook University, NY, U.S.A., Zhu L; Department of Computer Science, Stony Brook University, NY, U.S.A., Diprima T; Department of Biomedical Informatics, Stony Brook University, NY, U.S.A., Kurc T; Department of Biomedical Informatics, Stony Brook University, NY, U.S.A; Department of Computer Science, Stony Brook University, NY, U.S.A., Tannenbaum A; Department of Computer Science, Stony Brook University, NY, U.S.A; Department of Applied Mathematics & Statistics, Stony Brook University, NY, U.S.A., Saltz J; Department of Biomedical Informatics, Stony Brook University, NY, U.S.A; Department of Computer Science, Stony Brook University, NY, U.S.A.

Publikováno v: Proceedings of SPIE--the International Society for Optical Engineering [Proc SPIE Int Soc Opt Eng] 2016 Feb; Vol. 9791. Date of Electronic Publication: 2016 Mar 23.