Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics.

Autor: Lindsey RL; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Gladney LM; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Huang AD; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Griswold T; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Katz LS; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Dinsmore BA; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Im MS; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Kucerova Z; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Smith PA; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Lane C; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Carleton HA; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States.

Publikováno v: Frontiers in microbiology [Front Microbiol] 2023 Dec 14; Vol. 14, pp. 1225207. Date of Electronic Publication: 2023 Dec 14 (Print Publication: 2023).

Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association.

Autor: Nguyen SV; 1​UCD-Centre for Food Safety, School of Public Health, Physiotherapy and Sports Science, University College Dublin, Belfield, Dublin D04 N2E5, Ireland., Harhay DM; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA., Bono JL; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA., Smith TPL; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA., Fields PI; 3​Enteric Disease Laboratory Branch, Division of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329, USA., Dinsmore BA; 3​Enteric Disease Laboratory Branch, Division of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329, USA., Santovenia M; 3​Enteric Disease Laboratory Branch, Division of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329, USA., Wang R; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA., Bosilevac JM; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA., Harhay GP; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA.

Publikováno v: Microbial genomics [Microb Genom] 2018 Aug; Vol. 4 (8). Date of Electronic Publication: 2018 Jul 27.

Complete and Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Anatum Isolates from Human and Bovine Sources.

Autor: Nguyen SV; USDA ARS U.S. Meat Animal Research Center, Clay Center, Nebraska, USA., Harhay DM; USDA ARS U.S. Meat Animal Research Center, Clay Center, Nebraska, USA Dayna.harhay@ars.usda.gov., Bono JL; USDA ARS U.S. Meat Animal Research Center, Clay Center, Nebraska, USA., Smith TP; USDA ARS U.S. Meat Animal Research Center, Clay Center, Nebraska, USA., Fields PI; Enteric Diseases Laboratory Branch, Division of Foodborne, Waterborne and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Dinsmore BA; Enteric Diseases Laboratory Branch, Division of Foodborne, Waterborne and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Santovenia M; Enteric Diseases Laboratory Branch, Division of Foodborne, Waterborne and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Kelley CM; USDA ARS U.S. Meat Animal Research Center, Clay Center, Nebraska, USA., Wang R; USDA ARS U.S. Meat Animal Research Center, Clay Center, Nebraska, USA., Bosilevac JM; USDA ARS U.S. Meat Animal Research Center, Clay Center, Nebraska, USA., Harhay GP; USDA ARS U.S. Meat Animal Research Center, Clay Center, Nebraska, USA.

Publikováno v: Genome announcements [Genome Announc] 2016 Jun 02; Vol. 4 (3). Date of Electronic Publication: 2016 Jun 02.

Salmonella serotype determination utilizing high-throughput genome sequencing data.

Autor: Zhang S; Center for Food Safety, Department of Food Science and Technology, University of Georgia, Griffin, Georgia, USA., Yin Y; Department of Computer Science, Illinois Institute of Technology, Chicago, Illinois, USA., Jones MB; Department of Infectious Diseases, J. Craig Venter Institute, Rockville, Maryland, USA., Zhang Z; Department of Biostatistics, School of Public Health, University of Michigan, Ann Arbor, Michigan, USA., Deatherage Kaiser BL; Biological Sciences Division, Pacific Northwest National Laboratory, Richard, Washington, USA., Dinsmore BA; Division of Foodborne, Waterborne and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Fitzgerald C; Division of Foodborne, Waterborne and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Fields PI; Division of Foodborne, Waterborne and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA., Deng X; Center for Food Safety, Department of Food Science and Technology, University of Georgia, Griffin, Georgia, USA xdeng@uga.edu.

Publikováno v: Journal of clinical microbiology [J Clin Microbiol] 2015 May; Vol. 53 (5), pp. 1685-92. Date of Electronic Publication: 2015 Mar 11.