Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics.

Autor: Lindsey RL; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Gladney LM; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Huang AD; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Griswold T; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Katz LS; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Dinsmore BA; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Im MS; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Kucerova Z; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Smith PA; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Lane C; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States., Carleton HA; Centers for Disease Control and Prevention, Division of Foodborne, Waterborne and Environmental Diseases, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, United States.

Publikováno v: Frontiers in microbiology [Front Microbiol] 2023 Dec 14; Vol. 14, pp. 1225207. Date of Electronic Publication: 2023 Dec 14 (Print Publication: 2023).

Comparative genomics analysis of Salmonella Enteritidis isolated from clinical cases associated with chicken.

Autor: Bu, Xiangfeng¹ (AUTHOR), Wu, Yufan² (AUTHOR), Hong, Yi¹ (AUTHOR), Shi, Juping³ (AUTHOR), Shao, Jingdong⁴ (AUTHOR), Jia, Kai¹ (AUTHOR), Dong, Qingli¹ (AUTHOR), Wang, Xiang¹ (AUTHOR) xiang.wang@usst.edu.cn

Publikováno v: BMC Microbiology. 11/25/2024, Vol. 24 Issue 1, p1-17. 17p.

Outbreak detection in Harar town and Kersa district, Ethiopia using phylogenetic analysis and source attribution.

Autor: Thystrup, Cecilie¹ (AUTHOR) ceth@dtu.dk, Hald, Tine¹ (AUTHOR), Belina, Dinaol^2,3 (AUTHOR), Gobena, Tesfaye⁴ (AUTHOR)

Publikováno v: BMC Infectious Diseases. 8/26/2024, Vol. 24 Issue 1, p1-11. 11p.

Salmonella Typhi genotypic diversity, cluster identification and antimicrobial resistance determinants in Mukuru settlement, Nairobi Kenya.

Autor: Kasiano, Purity^1,2 (AUTHOR) kasianopurity@gmail.com, Morita, Masatomo³ (AUTHOR), Kodama, Toshio^4,5 (AUTHOR), Hiyoshi, Hirotaka⁴ (AUTHOR), Kavai, Susan¹ (AUTHOR), Kiiru, Susan^1,2 (AUTHOR), Kariuki, Samuel^1,6 (AUTHOR)

Publikováno v: BMC Infectious Diseases. 7/24/2024, Vol. 24 Issue 1, p1-8. 8p.

Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association.

Autor: Nguyen SV; 1​UCD-Centre for Food Safety, School of Public Health, Physiotherapy and Sports Science, University College Dublin, Belfield, Dublin D04 N2E5, Ireland., Harhay DM; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA., Bono JL; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA., Smith TPL; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA., Fields PI; 3​Enteric Disease Laboratory Branch, Division of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329, USA., Dinsmore BA; 3​Enteric Disease Laboratory Branch, Division of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329, USA., Santovenia M; 3​Enteric Disease Laboratory Branch, Division of Foodborne, Waterborne, and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329, USA., Wang R; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA., Bosilevac JM; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA., Harhay GP; 2​USDA-ARS-US Meat Animal Research Center, Clay Center, NE 68933, USA.

Publikováno v: Microbial genomics [Microb Genom] 2018 Aug; Vol. 4 (8). Date of Electronic Publication: 2018 Jul 27.