Zobrazeno 1 - 10
of 18
pro vyhledávání: '"DingDing Cai"'
Autor:
Huifen Cao, Dongyang Xu, Ye Cai, Xueer Han, Lu Tang, Fan Gao, Yao Qi, DingDing Cai, Huifang Wang, Maxim Ri, Denis Antonets, Yuri Vyatkin, Yue Chen, Xiang You, Fang Wang, Estelle Nicolas, Philipp Kapranov
Publikováno v:
BMC Biology, Vol 19, Iss 1, Pp 1-24 (2021)
Abstract Background The majority of the human genome is transcribed in the form of long non-coding (lnc) RNAs. While these transcripts have attracted considerable interest, their molecular mechanisms of function and biological significance remain con
Externí odkaz:
https://doaj.org/article/f8c11f8e08bb498fa81fb30c0f58843e
Autor:
Huifen Cao, Lorena Salazar-García, Fan Gao, Thor Wahlestedt, Chun-Lin Wu, Xueer Han, Ye Cai, Dongyang Xu, Fang Wang, Lu Tang, Natalie Ricciardi, DingDing Cai, Huifang Wang, Mario P. S. Chin, James A. Timmons, Claes Wahlestedt, Philipp Kapranov
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-14 (2019)
Single strand breaks represent the most common form of DNA damage yet no methods to map them in a genome-wide fashion at single nucleotide resolution exist. Here the authors develop such a method and apply to uncover patterns of single-strand DNA “
Externí odkaz:
https://doaj.org/article/3feb697ac4a94e7e834ab5f5f7ce2e50
Publikováno v:
Image Analysis ISBN: 9783031314377
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::fc7145429034c095ad8ad6e22740a218
https://doi.org/10.1007/978-3-031-31438-4_31
https://doi.org/10.1007/978-3-031-31438-4_31
This paper proposes a universal framework, called OVE6D, for model-based 6D object pose estimation from a single depth image and a target object mask. Our model is trained using purely synthetic data rendered from ShapeNet, and, unlike most of the ex
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::64326fdb640c2fc14b2b848c787fbbdd
http://arxiv.org/abs/2203.01072
http://arxiv.org/abs/2203.01072
Autor:
Lu Tang, Yue Chen, Fang Wang, Philipp Kapranov, Xiang You, DingDing Cai, Dongyang Xu, Denis V. Antonets, Xueer Han, Huifen Cao, Estelle Nicolas, Ye Cai, Huifang Wang, Maxim Ri, Yao Qi, Fan Gao, Yuri Vyatkin
Publikováno v:
BMC Biology
BMC Biology, Vol 19, Iss 1, Pp 1-24 (2021)
BMC Biology, Vol 19, Iss 1, Pp 1-24 (2021)
Background The majority of the human genome is transcribed in the form of long non-coding (lnc) RNAs. While these transcripts have attracted considerable interest, their molecular mechanisms of function and biological significance remain controversia
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::975fd9d8e91bfcafc6b7896c4975372e
https://doi.org/10.1186/s12915-021-01044-x
https://doi.org/10.1186/s12915-021-01044-x
Autor:
Huifen Cao, Dongyang Xu, Cai, Ye, Xueer Han, Tang, Lu, Gao, Fan, Qi, Yao, DingDing Cai, Huifang Wang, Ri, Maxim, Antonets, Denis, Vyatkin, Yuri, Chen, Yue, You, Xiang, Wang, Fang, Nicolas, Estelle, Kapranov, Philipp
Additional file 2: Supplemental Figure S1. UCSC Browser shot for the vlincRNA ID-1202 (Additional file 1: Supplemental Table S18) used in the RAT experiments. The vlincRNA (found on the minus strand) is antisense to RTP4 gene. K562 promoters are base
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::54eb04dfd80316d8c8934c161a6744b2
Autor:
Huifen Cao, Dongyang Xu, Cai, Ye, Xueer Han, Tang, Lu, Gao, Fan, Qi, Yao, DingDing Cai, Huifang Wang, Ri, Maxim, Antonets, Denis, Vyatkin, Yuri, Chen, Yue, You, Xiang, Wang, Fang, Nicolas, Estelle, Kapranov, Philipp
Additional file 6: Supplemental Figure S5. Boxplots of non-zero ANARS in the cis and all co-expressed genes for gene boundaries and upstream or downstream 5 kb flanking regions and for all indicated vlincRNA-treatment combinations.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::98474a7e91ed439054f8f337869753a6
Autor:
Huifen Cao, Dongyang Xu, Cai, Ye, Xueer Han, Tang, Lu, Gao, Fan, Qi, Yao, DingDing Cai, Huifang Wang, Ri, Maxim, Antonets, Denis, Vyatkin, Yuri, Chen, Yue, You, Xiang, Wang, Fang, Nicolas, Estelle, Kapranov, Philipp
Additional file 3: Supplemental Figure S2. A flow chart diagram of calculating average normalized aggregated RAT score (ANARS) for gene boundaries and upstream or downstream 5 kb flanking regions.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::62d13cac5aa02ca38a43c5d473376ecc
Autor:
Huifen Cao, Dongyang Xu, Cai, Ye, Xueer Han, Tang, Lu, Gao, Fan, Qi, Yao, DingDing Cai, Huifang Wang, Ri, Maxim, Antonets, Denis, Vyatkin, Yuri, Chen, Yue, You, Xiang, Wang, Fang, Nicolas, Estelle, Kapranov, Philipp
Additional file 4: Supplemental Figure S3. ECDF plots of ANARS in the boundaries and upstream or downstream 5 kb flanking regions of positively and negatively co-expressed genes and background genes for each indicated vlincRNA-treatment combination.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::101fdaace4784543dd7c66d5d5c8a441
Autor:
Huifen Cao, Dongyang Xu, Cai, Ye, Xueer Han, Tang, Lu, Gao, Fan, Qi, Yao, DingDing Cai, Huifang Wang, Ri, Maxim, Antonets, Denis, Vyatkin, Yuri, Chen, Yue, You, Xiang, Wang, Fang, Nicolas, Estelle, Kapranov, Philipp
Additional file 5: Supplemental Figure S4. Distribution of the statistical significance of enrichment of ANARS in the co-expressed vs the background genes (top) and cis only vs all co-expressed genes (bottom) for gene boundaries and upstream or downs
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5fd17e5b0e3094346a0be7abad6881d6