fastER: a user-friendly tool for ultrafast and robust cell segmentation in large-scale microscopy

Autor: Hilsenbeck, Oliver, Schwarzfischer, Michael, Loeffler, Dirk, Dimopoulos, Sotiris, Hastreiter, Simon, Marr, Carsten, Theis, Fabian J., Schroeder, Timm, Murphy, Robert

Motivation Quantitative large-scale cell microscopy is widely used in biological and medical research. Such experiments produce huge amounts of image data and thus require automated analysis. However, automated detection of cell outlines (cell segmen

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http://doc.rero.ch/record/332912/files/BIOINFORMATICS_33_13_2020.pdf

Inferring causal metabolic signals that regulate the dynamic TORC1-dependent transcriptome.

Autor: Oliveira, Ana Paula¹, Dimopoulos, Sotiris², Busetto, Alberto Giovanni³, Christen, Stefan¹, Dechant, Reinhard⁴, Falter, Laura¹, Haghir Chehreghani, Morteza³, Jozefczuk, Szymon¹, Ludwig, Christina¹, Rudroff, Florian¹, Schulz, Juliane Caroline¹, González, Asier⁵, Soulard, Alexandre^5,6, Stracka, Daniele⁵, Aebersold, Ruedi^1,7, Buhmann, Joachim M³, Hall, Michael N⁵, Peter, Matthias⁴, Sauer, Uwe¹, Stelling, Jörg²

Publikováno v: Molecular Systems Biology. Apr2015, Vol. 11 Issue 4, pn/a-N.PAG. 15p.

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A specialized ODE integrator for the efficient computation of parameter sensitivities

Autor: Gonnet, Pedro, Dimopoulos, Sotiris, Widmer, Lukas, Stelling, Jörg

Publikováno v: BMC Systems Biology, 6
BMC Systems Biology
BMC Systems Biology, Vol 6, Iss 1, p 46 (2012)
BMC systems biology, 2012, Vol.6, pp.46 [Peer Reviewed Journal]
BMC Systems Biology; Vol 6

Background Dynamic mathematical models in the form of systems of ordinary differential equations (ODEs) play an important role in systems biology. For any sufficiently complex model, the speed and accuracy of solving the ODEs by numerical integration

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9b89904ac9f6693364a185bf19e13932