High Rhodotorula Sequences in Skin Transcriptome of Patients with Diffuse Systemic Sclerosis

Autor: Arron, Sarah, Arron, ST, Dimon, MT, Li, Z, Johnson, ME, A, T, Feeney, L, G, J, Lafyatis, R, Whitfield, ML

Publikováno v: Arron, Sarah; Arron, ST; Dimon, MT; Li, Z; Johnson, ME; A, T; et al.(2014). High Rhodotorula Sequences in Skin Transcriptome of Patients with Diffuse Systemic Sclerosis. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/0fm9f589

Previous studies have suggested a role for pathogens as a trigger of systemic sclerosis (SSc), although neither a pathogen nor a mechanism of pathogenesis is known. Here we show enrichment of Rhodotorula sequences in the skin of patients with early,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::91e61dd59772e4d412441d0d1fbbfb43
http://www.escholarship.org/uc/item/0fm9f589

High Rhodotorula sequences in skin transcriptome of patients with diffuse systemic sclerosis.

Autor: Arron ST; Department of Dermatology, University of California, San Francisco, San Francisco, California, USA. Electronic address: arrons@derm.ucsf.edu., Dimon MT; Department of Dermatology, University of California, San Francisco, San Francisco, California, USA., Li Z; Department of Genetics, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA., Johnson ME; Department of Genetics, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA., Wood TA; Department of Genetics, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA., Feeney L; Department of Dermatology, University of California, San Francisco, San Francisco, California, USA., Angeles JG; Department of Dermatology, University of California, San Francisco, San Francisco, California, USA., Lafyatis R; Department of Medicine, Boston University School of Medicine, Boston, Massachusetts, USA., Whitfield ML; Department of Genetics, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA. Electronic address: michael.L.whitfield@dartmouth.edu.

Publikováno v: The Journal of investigative dermatology [J Invest Dermatol] 2014 Aug; Vol. 134 (8), pp. 2138-2145. Date of Electronic Publication: 2014 Mar 07.

IMSA: integrated metagenomic sequence analysis for identification of exogenous reads in a host genomic background.

Autor: Dimon MT; Department of Dermatology, University of California San Francisco, San Francisco, California, United States of America., Wood HM, Rabbitts PH, Arron ST

Publikováno v: PloS one [PLoS One] 2013 May 23; Vol. 8 (5), pp. e64546. Date of Electronic Publication: 2013 May 23 (Print Publication: 2013).

Assemblathon 1: a competitive assessment of de novo short read assembly methods.

Autor: Earl D; Center for Biomolecular Science and Engineering, University of California, Santa Cruz, California 95064, USA., Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, Simpson JT, Fonseca NA, Birol İ, Docking TR, Ho IY, Rokhsar DS, Chikhi R, Lavenier D, Chapuis G, Naquin D, Maillet N, Schatz MC, Kelley DR, Phillippy AM, Koren S, Yang SP, Wu W, Chou WC, Srivastava A, Shaw TI, Ruby JG, Skewes-Cox P, Betegon M, Dimon MT, Solovyev V, Seledtsov I, Kosarev P, Vorobyev D, Ramirez-Gonzalez R, Leggett R, MacLean D, Xia F, Luo R, Li Z, Xie Y, Liu B, Gnerre S, MacCallum I, Przybylski D, Ribeiro FJ, Yin S, Sharpe T, Hall G, Kersey PJ, Durbin R, Jackman SD, Chapman JA, Huang X, DeRisi JL, Caccamo M, Li Y, Jaffe DB, Green RE, Haussler D, Korf I, Paten B

Publikováno v: Genome research [Genome Res] 2011 Dec; Vol. 21 (12), pp. 2224-41. Date of Electronic Publication: 2011 Sep 16.

RNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species, Aedes aegypti.

Autor: Bonizzoni M; Department of Molecular Biology and Biochemistry, University of California, Irvine, California, USA., Dunn WA, Campbell CL, Olson KE, Dimon MT, Marinotti O, James AA

Publikováno v: BMC genomics [BMC Genomics] 2011 Jan 28; Vol. 12, pp. 82. Date of Electronic Publication: 2011 Jan 28.