A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage

Autor: Emmanuel Faure, Thierry Savy, Barbara Rizzi, Camilo Melani, Olga Stašová, Dimitri Fabrèges, Róbert Špir, Mark Hammons, Róbert Čúnderlík, Gaëlle Recher, Benoît Lombardot, Louise Duloquin, Ingrid Colin, Jozef Kollár, Sophie Desnoulez, Pierre Affaticati, Benoît Maury, Adeline Boyreau, Jean-Yves Nief, Pascal Calvat, Philippe Vernier, Monique Frain, Georges Lutfalla, Yannick Kergosien, Pierre Suret, Mariana Remešíková, René Doursat, Alessandro Sarti, Karol Mikula, Nadine Peyriéras, Paul Bourgine

Publikováno v: Nature Communications, Vol 7, Iss 1, Pp 1-10 (2016)

Quantitative analysis of embryonic cell dynamics from large data sets remains a major challenge in the field of developmental biology. Here the authors develop software and a workflow to reconstruct cell lineage trees from 3D time lapse imaging data

Externí odkaz: https://doaj.org/article/8806e413a23947af8650a0bb9603ea15

An ex vivo system to study cellular dynamics underlying mouse peri-implantation development

Autor: Takafumi Ichikawa, Hui Ting Zhang, Laura Panavaite, Anna Erzberger, Dimitri Fabrèges, Rene Snajder, Adrian Wolny, Ekaterina Korotkevich, Nobuko Tsuchida-Straeten, Lars Hufnagel, Anna Kreshuk, Takashi Hiiragi

Publikováno v: Developmental Cell, 57(3), 373-386.e9. Cell Press

Upon implantation, mammalian embryos undergo major morphogenesis and key developmental processes such as body axis specification and gastrulation. However, limited accessibility obscures the study of these crucial processes. Here, we develop an ex vi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9faacf34950a26a1558fb299cc0f2d06
https://pure.knaw.nl/portal/en/publications/e7c226ed-9a7f-4f45-be3e-77de38e30b96

Control of the proportion of inner cells by asymmetric divisions and the ensuing resilience of cloned rabbit embryos

Autor: Dimitri, Fabrèges, Nathalie, Daniel, Véronique, Duranthon, Nadine, Peyriéras

Publikováno v: Development (Cambridge, England)
Development (Cambridge, England), Company of Biologists, 2018, 145 (8), pp.1-7. ⟨10.1242/dev.152041⟩
Development (Cambridge, England), Company of Biologists, 2018, 145 (8), ⟨10.1242/dev.152041⟩

Mammalian embryo cloning by nuclear transfer has a low success rate. This is hypothesized to correlate with a high variability of early developmental steps that segregate outer cells, which are fated to extra-embryonic tissues, from inner cells, whic

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::50b1e2608e65e46aaeefabda9a90cd8b
https://hal.archives-ouvertes.fr/hal-01831822/file/2018_Fabreges_Development_1.pdf

A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage

Autor: Thierry Savy, Barbara Rizzi, Benoit Maury, Nadine Peyriéras, Ingrid Colin, Pierre Affaticati, Sophie Desnoulez, Emmanuel Faure, Róbert Čunderlík, Yannick L. Kergosien, Adeline Boyreau, Jozef Kollár, René Doursat, Jean Yves Nief, Philippe Vernier, Mariana Remešíková, Pascal Calvat, Camilo Melani, Mark Hammons, Olga Stašová, Alessandro Sarti, Georges Lutfalla, Benoit Lombardot, Dimitri Fabrèges, Louise Duloquin, Karol Mikula, Gaëlle Recher, Paul Bourgine, Róbert Špir, Monique Frain, Pierre Suret

Publikováno v: Nature Communications
Nature Communications, Nature Publishing Group, 2016, 7, pp.8674. ⟨10.1038/ncomms9674⟩
Nature Communications, Vol 7, Iss 1, Pp 1-10 (2016)
Nature Communications, 2016, 7, pp.8674. ⟨10.1038/ncomms9674⟩

The quantitative and systematic analysis of embryonic cell dynamics from in vivo 3D+time image data sets is a major challenge at the forefront of developmental biology. Despite recent breakthroughs in the microscopy imaging of living systems, produci

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ca78e76f560c545975ee49ca1943479c
https://e-space.mmu.ac.uk/605024/