Zobrazeno 1 - 10
of 26
pro vyhledávání: '"Didier Barradas Bautista"'
Autor:
Attila Gabor, Marco Tognetti, Alice Driessen, Jovan Tanevski, Baosen Guo, Wencai Cao, He Shen, Thomas Yu, Verena Chung, Single Cell Signaling in Breast Cancer DREAM Consortium members, Bernd Bodenmiller, Julio Saez‐Rodriguez, Augustinas Prusokas, Alidivinas Prusokas, Renata Retkute, Anand Rajasekar, Karthik Raman, Malvika Sudhakar, Raghunathan Rengaswamy, Edward S.C. Shih, Min‐jeong Kim, Changje Cho, Dohyang Kim, Hyeju Oh, Jinseub Hwang, Kim Jongtae, Yeongeun Nam, Sanghoo Yoon, Taeyong Kwon, Kyeongjun Lee, Sarika Chaudhary, Nehal Sharma, Shreya Bande, Gao Gao fan zhu Cankut Cubuk, Pelin Gundogdu, Joaquin Dopazo, Kinza Rian, Carlos Loucera, Matias M Falco, Martin Garrido‐Rodriguez, Maria Peña‐Chilet, Huiyuan Chen, Gabor Turu, Laszlo Hunyadi, Adam Misak, Lisheng Zhou, Xiaoqing Jiang, Pieta Zhang, Aakansha Rai, Rintu Kutum, Sadhna Rana, Rajgopal Srinivasan, Swatantra Pradhan, James Li, Vladimir Bajic, Christophe Van Neste, Didier Barradas‐bautista, Somayah Abdullah Albarade, Igor Nikolskiy, Musalula Sinkala, Duc Tran, Hung Nguyen, Tin Nguyen, Alexander Wu, Benjamin DeMeo, Brian Hie, Rohit Singh, Jiwei Liu, Xueer Chen, Leonor Saiz, Jose M. G Vilar, Peng Qiu, Akash Gosain, Anjali Dhall, Dinesh Bajaj, Harpreet Kaur, Krishna Bagaria, Mayank Chauhan, Neelam Sharma, Gajendra Raghava, Sumeet Patiyal, Jianye Hao, Jiajie Peng, Shangyi Ning, Yi Ma, Zhongyu Wei, Atte Aalto, Jorge Goncalves, Laurent Mombaerts, Xinnan Dai, Jie Zheng, Piyushkumar Mundra, Fan Xu, Jie Wang, Krishna Kant Singh, Mingyu Lee
Publikováno v:
Molecular Systems Biology, Vol 17, Iss 10, Pp 1-16 (2021)
Abstract Recent technological developments allow us to measure the status of dozens of proteins in individual cells. This opens the way to understand the heterogeneity of complex multi‐signaling networks across cells and cell types, with important
Externí odkaz:
https://doaj.org/article/bcd5b154a6e240949fe3c514a36f69b2
Publikováno v:
BMC Bioinformatics, Vol 21, Iss S8, Pp 1-18 (2020)
Abstract Background Properly scoring protein-protein docking models to single out the correct ones is an open challenge, also object of assessment in CAPRI (Critical Assessment of PRedicted Interactions), a community-wide blind docking experiment. We
Externí odkaz:
https://doaj.org/article/a4be45632fa44c6f8950f3b75e3337c9
Publikováno v:
Nucleic Acids Research.
Computational docking is an instrumental method of the structural biology toolbox. Specifically, integrative modeling software, such as LightDock, arise as complementary and synergetic methods to experimental structural biology techniques. Ubiquitous
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bf34bdc8ecc5f0b27a73040452f6efc0
https://doi.org/10.1093/nar/gkad327
https://doi.org/10.1093/nar/gkad327
Autor:
Hugo Schweke, Qifang Xu, Gerardo Tauriello, Lorenzo Pantolini, Torsten Schwede, Frédéric Cazals, Alix Lhéritier, Juan Fernandez-Recio, Luis Ángel Rodríguez-Lumbreras, Ora Schueler-Furman, Julia K. Varga, Brian Jiménez-García, Manon F. Réau, Alexandre Bonvin, Castrense Savojardo, Pier-Luigi Martelli, Rita Casadio, Jérôme Tubiana, Haim Wolfson, Romina Oliva, Didier Barradas-Bautista, Tiziana Ricciardelli, Luigi Cavallo, Česlovas Venclovas, Kliment Olechnovič, Raphael Guerois, Jessica Andreani, Juliette Martin, Xiao Wang, Daisuke Kihara, Anthony Marchand, Bruno Correia, Xiaoqin Zou, Sucharita Dey, Roland Dunbrack, Emmanuel Levy, Shoshana Wodak
Reliably scoring and ranking candidate models of protein complexes and assigning their oligomeric state from the structure of the crystal lattice represent outstanding challenges. A community-wide effort was launched to tackle these challenges. The l
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::adaf2d977a6fae24f92d44626aa47f9a
https://doi.org/10.22541/au.167569565.51141128/v1
https://doi.org/10.22541/au.167569565.51141128/v1
Publikováno v:
PLoS ONE, Vol 13, Iss 5, p e0195654 (2018)
This work aims for modeling and simulating the metastasis of cancer, via the analogy between the cancer process and the board game Go. In the game of Go, black stones that play first could correspond to a metaphor of the birth, growth, and metastasis
Externí odkaz:
https://doaj.org/article/5aa434ae467d44e997df084ab2aff21f
Motivation Protein–protein interactions drive many relevant biological events, such as infection, replication and recognition. To control or engineer such events, we need to access the molecular details of the interaction provided by experimental 3
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ef666d53ed584d57390b8aea6de5137d
https://doi.org/10.1101/2022.10.22.512683
https://doi.org/10.1101/2022.10.22.512683
Publikováno v:
PLoS ONE, Vol 12, Iss 8, p e0183643 (2017)
Next-generation sequencing (NGS) technologies are providing genomic information for an increasing number of healthy individuals and patient populations. In the context of the large amount of generated genomic data that is being generated, understandi
Externí odkaz:
https://doaj.org/article/eaed9a0146184272984b700fc7e29de1
Herein, we present the results of a machine learning approach we developed to single out correct 3D docking models of protein–protein complexes obtained by popular docking software. To this aim, we generated 3×104 docking models for each of the 23
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1e4f24efa4527758f74dfd9a7db6db33
https://hdl.handle.net/11367/117876
https://hdl.handle.net/11367/117876
Autor:
Xiaoqin Zou, Théo Mauri, Hang Shi, Shaowen Zhu, Justas Dapkūnas, Yuanfei Sun, Didier Barradas-Bautista, Raphael A. G. Chaleil, Ragul Gowthaman, Sohee Kwon, Xianjin Xu, Zuzana Jandova, Genki Terashi, Ryota Ashizawa, Petras J. Kundrotas, Shuang Zhang, Tunde Aderinwale, Jian Liu, Sandor Vajda, Paul A. Bates, Jianlin Cheng, Daisuke Kihara, Luis A. Rodríguez-Lumbreras, Carlos A. Del Carpio Muñoz, Liming Qiu, Guillaume Brysbaert, Jorge Roel-Touris, Česlovas Venclovas, Tereza Clarence, Rui Yin, Amar Singh, Patryk A. Wesołowski, Rafał Ślusarz, Adam Liwo, Guangbo Yang, Agnieszka S. Karczyńska, Yoshiki Harada, Sergei Kotelnikov, Yuya Hanazono, Charlotte W. van Noort, Marc F. Lensink, Jonghun Won, Adam K. Sieradzan, Israel Desta, Xufeng Lu, Charles Christoffer, Anna Antoniak, Taeyong Park, Sheng-You Huang, Tsukasa Nakamura, Brian G. Pierce, Usman Ghani, Yang Shen, Luigi Cavallo, Chaok Seok, Hao Li, Nurul Nadzirin, Ghazaleh Taherzadeh, Jacob Verburgt, Rodrigo V. Honorato, Artur Giełdoń, Jeffrey J. Gray, Dima Kozakov, Ming Liu, Shan Chang, Eiichiro Ichiishi, Manon Réau, Rui Duan, Francesco Ambrosetti, Johnathan D. Guest, Juan Fernández-Recio, Alexandre M. J. J. Bonvin, Ilya A. Vakser, Farhan Quadir, Yumeng Yan, Ren Kong, Sameer Velankar, Sergei Grudinin, Mateusz Kogut, Mikhail Ignatov, Yasuomi Kiyota, Hyeonuk Woo, Shoshana J. Wodak, Ameya Harmalkar, Shinpei Kobayashi, Panagiotis I. Koukos, Zhen Cao, Kliment Olechnovič, Cezary Czaplewski, Xiao Wang, Agnieszka G. Lipska, Kathryn A. Porter, Peicong Lin, Emilia A. Lubecka, Nasser Hashemi, Bin Liu, Mayuko Takeda-Shitaka, Karolina Zięba, Dzmitry Padhorny, Zhuyezi Sun, Daipayan Sarkar, Romina Oliva, Andrey Alekseenko, Siri Camee van Keulen, Mireia Rosell, Raj S. Roy, Brian Jiménez-García, Jinsol Yang, Martyna Maszota-Zieleniak
Publikováno v:
Proteins: Structure, Function and Bioinformatics, 89(12), 1800. Wiley-Liss Inc.
Proteins-Structure, Function and Bioinformatics
Proteins-Structure, Function and Bioinformatics, Wiley, 2021, ⟨10.1002/prot.26222⟩
Digital.CSIC. Repositorio Institucional del CSIC
instname
Proteins
Proteins-Structure, Function and Bioinformatics, 2021, 89 (12), pp.1800-1823. ⟨10.1002/prot.26222⟩
Proteins-Structure, Function and Bioinformatics
Proteins-Structure, Function and Bioinformatics, Wiley, 2021, ⟨10.1002/prot.26222⟩
Digital.CSIC. Repositorio Institucional del CSIC
instname
Proteins
Proteins-Structure, Function and Bioinformatics, 2021, 89 (12), pp.1800-1823. ⟨10.1002/prot.26222⟩
We present the results for CAPRI Round 50, the fourth joint CASP-CAPRI protein assembly prediction challenge. The Round comprised a total of twelve targets, including six dimers, three trimers, and three higher-order oligomers. Four of these were eas
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8f1657fc608b7d209e1b9345caf8b2fb
https://dspace.library.uu.nl/handle/1874/417637
https://dspace.library.uu.nl/handle/1874/417637
Autor:
Yumeng Yan, Mateusz Kogut, Sohee Kwon, Israel Desta, Petras J. Kundrotas, Xiaoqin Zou, Xiao Wang, Dima Kozakov, Eiichiro Ichiishi, Kathryn A. Porter, Johnathan D. Guest, Brian G. Pierce, Daisuke Kihara, Česlovas Venclovas, Agnieszka G. Lipska, Luigi Cavallo, Panagiotis I. Koukos, Yang Shen, Ren Kong, Brian Jiménez-García, Kliment Olechnovič, Cezary Czaplewski, Peicong Lin, Sameer Velankar, Shoshana J. Wodak, Agnieszka S. Karczyńska, Emilia A. Lubecka, Mikhail Ignatov, Shan Chang, Daipayan Sarkar, Sheng-You Huang, Chaok Seok, Nurul Nadzirin, Hao Li, Anna Antoniak, Manon Réau, Hyeonuk Woo, Siri Camee van Keulen, Ryota Ashizawa, Nasser Hashemi, Adam Liwo, Zhen Cao, Yoshiki Harada, Genki Terashi, Ameya Harmalkar, Farhan Quadir, Shinpei Kobayashi, Sandor Vajda, Zuzana Jandova, Juan Fernández-Recio, Amar Singh, Martyna Maszota-Zieleniak, Rodrigo V. Honorato, Usman Ghani, Sergei Grudinin, Xufeng Lu, Jorge Roel-Touris, Ming Liu, Paul A. Bates, Ghazaleh Taherzadeh, Adam K. Sieradzan, Patryk A. Wesołowski, Théo Mauri, Ilya A. Vakser, Francesco Ambrosetti, Jinsol Yang, Sergei Kotelnikov, Hang Shi, Shuang Zhang, Marc F. Lensink, Justas Dapkūnas, Yasuomi Kiyota, Taeyong Park, Mayuko Takeda-Shitaka, Andrey Alekseenko, Jian Liu, Artur Giełdoń, Ragul Gowthaman, Jonghun Won, Tsukasa Nakamura, Tunde Aderinwale, Yuanfei Sun, Guillaume Brysbaert, Jeffrey J. Gray, Luis A. Rodríguez-Lumbreras, Yuya Hanazono, Charlotte W. van Noort, Carlos A. Del Carpio Muñoz, Rui Duan, Alexandre M. J. J. Bonvin, Jianlin Cheng, Liming Qiu, Tereza Clarence, Rui Yin, Guangbo Yang, Shaowen Zhu, Didier Barradas-Bautista, Rafał Ślusarz, Raphael A. G. Chaleil, Charles Christoffer, Jacob Verburgt, Dzmitry Padhorny, Zhuyezi Sun, Romina Oliva, Mireia Rosell, Raj S. Roy, Bin Liu, Karolina Zięba
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4ef61647ab31e6706772c0fd1df032b4
https://doi.org/10.1002/prot.26222/v2/response1
https://doi.org/10.1002/prot.26222/v2/response1