Semaphorin-3A regulates liver sinusoidal endothelial cell porosity and promotes hepatic steatosis.

Autor: Eberhard D; Heinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Metabolic Physiology, Düsseldorf, Germany., Balkenhol S; Heinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Metabolic Physiology, Düsseldorf, Germany.; Institute for Vascular and Islet Cell Biology, German Diabetes Center (DDZ), Leibniz Center for Diabetes Research at Heinrich Heine University, Düsseldorf, Germany.; German Center for Diabetes Research (DZD), Neuherberg, Germany., Köster A; Heinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Metabolic Physiology, Düsseldorf, Germany., Follert P; Heinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Metabolic Physiology, Düsseldorf, Germany., Upschulte E; Cécile & Oskar Vogt Institute of Brain Research, Medical Faculty and University Hospital Düsseldorf, Düsseldorf, Germany.; Institute of Neuroscience and Medicine (INM-1), Research Center Jülich, Jülich, Germany.; Helmholtz AI, Research Center Jülich, Jülich, Germany., Ostermann P; Heinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Metabolic Physiology, Düsseldorf, Germany., Kirschner P; Heinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Metabolic Physiology, Düsseldorf, Germany., Uhlemeyer C; Institute for Vascular and Islet Cell Biology, German Diabetes Center (DDZ), Leibniz Center for Diabetes Research at Heinrich Heine University, Düsseldorf, Germany.; German Center for Diabetes Research (DZD), Neuherberg, Germany., Charnay I; Heinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Metabolic Physiology, Düsseldorf, Germany., Preuss C; German Center for Diabetes Research (DZD), Neuherberg, Germany.; Institute for Clinical Diabetology, German Diabetes Center, Leibniz Center for Diabetes Research at Heinrich Heine University, Düsseldorf, Germany., Trenkamp S; German Center for Diabetes Research (DZD), Neuherberg, Germany.; Institute for Clinical Diabetology, German Diabetes Center, Leibniz Center for Diabetes Research at Heinrich Heine University, Düsseldorf, Germany., Belgardt BF; Institute for Vascular and Islet Cell Biology, German Diabetes Center (DDZ), Leibniz Center for Diabetes Research at Heinrich Heine University, Düsseldorf, Germany.; German Center for Diabetes Research (DZD), Neuherberg, Germany., Dickscheid T; Institute of Neuroscience and Medicine (INM-1), Research Center Jülich, Jülich, Germany.; Helmholtz AI, Research Center Jülich, Jülich, Germany.; Heinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Computer Science, Düsseldorf, Germany., Esposito I; Institute of Pathology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University, Düsseldorf, Germany., Roden M; German Center for Diabetes Research (DZD), Neuherberg, Germany.; Institute for Clinical Diabetology, German Diabetes Center, Leibniz Center for Diabetes Research at Heinrich Heine University, Düsseldorf, Germany.; Division of Endocrinology and Diabetology, Medical Faculty and University Hospital Düsseldorf, Heinrich Heine University, Düsseldorf, Germany., Lammert E; Heinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute of Metabolic Physiology, Düsseldorf, Germany. lammert@hhu.de.; Institute for Vascular and Islet Cell Biology, German Diabetes Center (DDZ), Leibniz Center for Diabetes Research at Heinrich Heine University, Düsseldorf, Germany. lammert@hhu.de.; German Center for Diabetes Research (DZD), Neuherberg, Germany. lammert@hhu.de.

Publikováno v: Nature cardiovascular research [Nat Cardiovasc Res] 2024 Jun; Vol. 3 (6), pp. 734-753. Date of Electronic Publication: 2024 Jun 14.

The multimodality cell segmentation challenge: toward universal solutions.

Autor: Ma J; Peter Munk Cardiac Centre, University Health Network, Toronto, Ontario, Canada.; Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, Canada.; Vector Institute, Toronto, Ontario, Canada., Xie R; Peter Munk Cardiac Centre, University Health Network, Toronto, Ontario, Canada.; Vector Institute, Toronto, Ontario, Canada.; Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada., Ayyadhury S; Donnelly Centre, University of Toronto, Toronto, Ontario, Canada.; Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada., Ge C; School of Medicine and Pharmacy, Ocean University of China, Qingdao, China., Gupta A; Department of Electronics and Communications Engineering, Indraprastha Institute of Information Technology Delhi (IIITD), New Delhi, India., Gupta R; Laboratory Oncology Unit, Dr. BRAIRCH, All India Institute of Medical Sciences, New Delhi, India., Gu S; Department of Image Reconstruction, Nanjing Anke Medical Technology Co., Nanjing, China., Zhang Y; Shanghai Artificial Intelligence Laboratory, Shanghai, China., Lee G; Graduate School of AI, KAIST, Seoul, South Korea., Kim J; Graduate School of AI, KAIST, Seoul, South Korea., Lou W; Shenzhen Research Institute of Big Data, Shenzhen, China.; Chinese University of Hong Kong (Shenzhen), Shenzhen, China., Li H; Shenzhen Research Institute of Big Data, Shenzhen, China., Upschulte E; Institute of Neuroscience and Medicine (INM-1) and Helmholtz AI, Research Center Jülich, Jülich, Germany., Dickscheid T; Institute of Neuroscience and Medicine (INM-1) and Helmholtz AI, Research Center Jülich, Jülich, Germany.; Faculty of Mathematics and Natural Sciences - Institute of Computer Science, Heinrich Heine University Düsseldorf, Düsseldorf, Germany., de Almeida JG; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK.; Champalimaud Foundation - Centre for the Unknown, Lisbon, Portugal., Wang Y; Department of Bioengineering, Stanford University, Palo Alto, CA, USA., Han L; Tandon School of Engineering, New York University, New York, NY, USA., Yang X; School of Biomedical Engineering, Health Science Center, Shenzhen University, Shenzhen, China., Labagnara M; Laboratory of the Physics of Biological Systems, Institute of Physics, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland., Gligorovski V; Laboratory of the Physics of Biological Systems, Institute of Physics, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland., Scheder M; Laboratory of the Physics of Biological Systems, Institute of Physics, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland., Rahi SJ; Laboratory of the Physics of Biological Systems, Institute of Physics, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland., Kempster C; School of Biological Sciences, University of Reading, Reading, UK., Pollitt A; School of Biological Sciences, University of Reading, Reading, UK., Espinosa L; Laboratoire de Chimie Bactérienne, CNRS-Université Aix-Marseille UMR, Institut de Microbiologie de la Méditerranée, Marseille, France., Mignot T; Laboratoire de Chimie Bactérienne, CNRS-Université Aix-Marseille UMR, Institut de Microbiologie de la Méditerranée, Marseille, France., Middeke JM; Department of Internal Medicine I, University Hospital Dresden, Technical University Dresden, Dresden, Germany.; Else Kroener Fresenius Center for Digital Health, Technical University Dresden, Dresden, Germany., Eckardt JN; Department of Internal Medicine I, University Hospital Dresden, Technical University Dresden, Dresden, Germany.; Else Kroener Fresenius Center for Digital Health, Technical University Dresden, Dresden, Germany., Li W; Department of Automation, University of Science and Technology of China, Hefei, China., Li Z; Institute of Advanced Technology, University of Science and Technology of China, Hefei, China., Cai X; Department of Computer Science and Technology, Nanjing University, Nanjing, China., Bai B; School of EECS, The University of Queensland, Brisbane, Queensland, Australia., Greenwald NF; School of Medicine, Stanford University, Palo Alto, CA, USA., Van Valen D; Division of Computing and Mathematical Science, Caltech, Pasadena, CA, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Weisbart E; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Cimini BA; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Cheung T; Peter Munk Cardiac Centre, University Health Network, Toronto, Ontario, Canada.; Department of Computer Science, University of Waterloo, Waterloo, Ontario, Canada., Brück O; Hematoscope Laboratory, Comprehensive Cancer Center & Center of Diagnostics, Helsinki University Hospital, Helsinki, Finland.; Department of Oncology, University of Helsinki, Helsinki, Finland., Bader GD; Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.; Donnelly Centre, University of Toronto, Toronto, Ontario, Canada.; Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.; Department of Computer Science, University of Toronto, Toronto, Ontario, Canada.; Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada.; CIFAR Multiscale Human Program, CIFAR, Toronto, Ontario, Canada., Wang B; Peter Munk Cardiac Centre, University Health Network, Toronto, Ontario, Canada. bowang@vectorinstitute.ai.; Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, Canada. bowang@vectorinstitute.ai.; Vector Institute, Toronto, Ontario, Canada. bowang@vectorinstitute.ai.; Department of Computer Science, University of Toronto, Toronto, Ontario, Canada. bowang@vectorinstitute.ai.; UHN AI Hub, University Health Network, Toronto, Ontario, Canada. bowang@vectorinstitute.ai.

Publikováno v: Nature methods [Nat Methods] 2024 Jun; Vol. 21 (6), pp. 1103-1113. Date of Electronic Publication: 2024 Mar 26.

A framework to improve the alignment of individual cytoarchitectonic maps of the Julich-Brain atlas using cortical folding landmarks.

Autor: Wang X; Université Paris-Saclay, CEA, CNRS, Neurospin, Baobab, Saclay, France., Leprince Y; Université Paris-Saclay, CEA, CNRS, Neurospin, Baobab, Saclay, France.; UNIACT, NeuroSpin, CEA, Université Paris-Saclay, F-91191 Gif-sur-Yvette, France., Lebenberg J; Université Paris-Saclay, CEA, CNRS, Neurospin, Baobab, Saclay, France.; Lariboisière University Hospital, APHP, Translational Neurovascular Centre and Department of Neurology, FHU NeuroVasc, Paris, France., Langlet C; Université Paris-Saclay, CEA, CNRS, Neurospin, Baobab, Saclay, France., Mohlberg H; Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, D-52425 Jülich, Germany., Rivière D; Université Paris-Saclay, CEA, CNRS, Neurospin, Baobab, Saclay, France., Auzias G; Institut de Neurosciences de la Timone, UMR 7289, Aix Marseille Université, CNRS, Marseille, France., Dickscheid T; Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, D-52425 Jülich, Germany.; Institute of Computer Science, Heinrich-Heine University Düsseldorf, D-40225 Düsseldorf, Germany., Amunts K; Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, D-52425 Jülich, Germany.; Cecile und Oskar Vogt Institut für Hirnforschung, University Hospital Düsseldorf, Heinrich-Heine Universität Düsseldorf, D-40225 Düsseldorf, Germany., Mangin JF; Université Paris-Saclay, CEA, CNRS, Neurospin, Baobab, Saclay, France.

Publikováno v: Cerebral cortex (New York, N.Y. : 1991) [Cereb Cortex] 2024 Jan 31; Vol. 34 (2).

AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures.

Autor: Kleven H; Department of Molecular Medicine, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway., Gillespie TH; Department of Neurosciences, University of California, San Diego, USA., Zehl L; Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Jülich, Germany., Dickscheid T; Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Jülich, Germany.; Institute of Computer Science, Heinrich Heine University Düsseldorf, Düsseldorf, Germany., Bjaalie JG; Department of Molecular Medicine, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway., Martone ME; Department of Neurosciences, University of California, San Diego, USA., Leergaard TB; Department of Molecular Medicine, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway. t.b.leergaard@medisin.uio.no.

Publikováno v: Scientific data [Sci Data] 2023 Jul 26; Vol. 10 (1), pp. 486. Date of Electronic Publication: 2023 Jul 26.

Characterization of regional differences in resting-state fMRI with a data-driven network model of brain dynamics.

Autor: Sip V; Aix-Marseille Université, INSERM, Institut de Neurosciences de Systèmes (INS), Marseille, France., Hashemi M; Aix-Marseille Université, INSERM, Institut de Neurosciences de Systèmes (INS), Marseille, France., Dickscheid T; Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Jülich, Germany., Amunts K; Institute of Neuroscience and Medicine (INM-1), Research Centre Jülich, Jülich, Germany., Petkoski S; Aix-Marseille Université, INSERM, Institut de Neurosciences de Systèmes (INS), Marseille, France., Jirsa V; Aix-Marseille Université, INSERM, Institut de Neurosciences de Systèmes (INS), Marseille, France.

Publikováno v: Science advances [Sci Adv] 2023 Mar 15; Vol. 9 (11), pp. eabq7547. Date of Electronic Publication: 2023 Mar 17.