Comparative Genomic Analysis of Bacterial Data in BV-BRC: An Example Exploring Antimicrobial Resistance.

Autor: Wattam AR; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA. wattam@virginia.edu., Bowers N; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL, USA., Brettin T; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, USA.; Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL, USA., Conrad N; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL, USA., Cucinell C; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA., Davis JJ; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL, USA., Dickerman AW; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA., Dietrich EM; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL, USA., Kenyon RW; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA., Machi D; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA., Mao C; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA., Nguyen M; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL, USA., Olson RD; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL, USA., Overbeek R; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, USA.; Fellowship for Interpretation of Genomes, Burr Ridge, IL, USA., Parrello B; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, USA.; Fellowship for Interpretation of Genomes, Burr Ridge, IL, USA., Pusch GD; Fellowship for Interpretation of Genomes, Burr Ridge, IL, USA., Shukla M; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL, USA., Stevens RL; Department of Computer Science, University of Chicago, Chicago, IL, USA., Vonstein V; Fellowship for Interpretation of Genomes, Burr Ridge, IL, USA., Warren AS; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA.

Publikováno v: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2024; Vol. 2802, pp. 547-571.

Identification of new protein-protein and protein-DNA interactions linked with wood formation in Populus trichocarpa.

Autor: Petzold HE; Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA 24061, USA., Rigoulot SB; Department of Horticulture, Virginia Tech, Blacksburg, VA 24061, USA., Zhao C; Department of Horticulture, Virginia Tech, Blacksburg, VA 24061, USA.; Department of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Blacksburg, VA 24061, USA., Chanda B; Department of Horticulture, Virginia Tech, Blacksburg, VA 24061, USA.; US Vegetable Laboratory, Charleston, SC 29414, USA., Sheng X; Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA 24061, USA., Zhao M; Department of Horticulture, Virginia Tech, Blacksburg, VA 24061, USA.; Agronomy College, Shenyang Agricultural University, Shenyang, Liaoning Province 110866, PR China., Jia X; Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA 24061, USA.; Department of Human Genetics, University of Michigan, Ann Arbor, MI 48109, USA., Dickerman AW; The Biocomplexity Institute at Virginia Tech, Blacksburg, VA 24061, USA., Beers EP; Department of Horticulture, Virginia Tech, Blacksburg, VA 24061, USA., Brunner AM; Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA 24061, USA.

Publikováno v: Tree physiology [Tree Physiol] 2018 Mar 01; Vol. 38 (3), pp. 362-377.

Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence.

Autor: Wattam AR; Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA., Foster JT, Mane SP, Beckstrom-Sternberg SM, Beckstrom-Sternberg JM, Dickerman AW, Keim P, Pearson T, Shukla M, Ward DV, Williams KP, Sobral BW, Tsolis RM, Whatmore AM, O'Callaghan D

Publikováno v: Journal of bacteriology [J Bacteriol] 2014 Mar; Vol. 196 (5), pp. 920-30. Date of Electronic Publication: 2013 Dec 13.

An active ac/ds transposon system for activation tagging in tomato cultivar m82 using clonal propagation.

Autor: Carter JD; Department of Horticulture, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA., Pereira A, Dickerman AW, Veilleux RE

Publikováno v: Plant physiology [Plant Physiol] 2013 May; Vol. 162 (1), pp. 145-56. Date of Electronic Publication: 2013 Apr 08.

Transposon tagging in diploid strawberry.

Autor: Veilleux RE; Department of Horticulture, Virginia Tech, Blacksburg, VA, USA. potato@vt.edu, Mills KP, Baxter AJ, Upham KT, Ferguson TJ, Holt SH, Lu N, Ruiz-Rojas JJ, Pantazis CJ, Davis CM, Lindsay RC, Powell FL, Dan Y, Dickerman AW, Oosumi T, Shulaev V

Publikováno v: Plant biotechnology journal [Plant Biotechnol J] 2012 Oct; Vol. 10 (8), pp. 985-94. Date of Electronic Publication: 2012 Jul 31.