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Predicting the Performance-Cost Trade-off of Applications Across Multiple Systems

Autor: Nassereldine, Amir, Diab, Safaa, Baydoun, Mohammed, Leach, Kenneth, Alt, Maxim, Milojicic, Dejan, Hajj, Izzat El

In modern computing environments, users may have multiple systems accessible to them such as local clusters, private clouds, or public clouds. This abundance of choices makes it difficult for users to select the system and configuration for running a

Externí odkaz: http://arxiv.org/abs/2304.01676

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A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems

Autor: Diab, Safaa, Nassereldine, Amir, Alser, Mohammed, Gómez-Luna, Juan, Mutlu, Onur, Hajj, Izzat El

Sequence alignment is a memory bound computation whose performance in modern systems is limited by the memory bandwidth bottleneck. Processing-in-memory architectures alleviate this bottleneck by providing the memory with computing competencies. We p

Externí odkaz: http://arxiv.org/abs/2208.01243

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High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory

Autor: Diab, Safaa, Nassereldine, Amir, Alser, Mohammed, Luna, Juan Gómez, Mutlu, Onur, Hajj, Izzat El

We show that the wavefront algorithm can achieve higher pairwise read alignment throughput on a UPMEM PIM system than on a server-grade multi-threaded CPU system.

Externí odkaz: http://arxiv.org/abs/2204.02085

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