Zobrazeno 1 - 10
of 29
pro vyhledávání: '"Derrick J Zwickl"'
Publikováno v:
PLoS ONE, Vol 8, Iss 6, p e66245 (2013)
Molecular divergence time analyses often rely on the age of fossil lineages to calibrate node age estimates. Most divergence time analyses are now performed in a Bayesian framework, where fossil calibrations are incorporated as parametric prior proba
Externí odkaz:
https://doaj.org/article/be8340de5c45480cb81da5fa68fbed09
Autor:
Jerome C Regier, Charles Mitter, Andreas Zwick, Adam L Bazinet, Michael P Cummings, Akito Y Kawahara, Jae-Cheon Sohn, Derrick J Zwickl, Soowon Cho, Donald R Davis, Joaquin Baixeras, John Brown, Cynthia Parr, Susan Weller, David C Lees, Kim T Mitter
Publikováno v:
PLoS ONE, Vol 8, Iss 3, p e58568 (2013)
Higher-level relationships within the Lepidoptera, and particularly within the species-rich subclade Ditrysia, are generally not well understood, although recent studies have yielded progress. We present the most comprehensive molecular analysis of l
Externí odkaz:
https://doaj.org/article/717b9514d0b74d068ab303498d28ccde
Publikováno v:
PLoS ONE, Vol 7, Iss 11, p e47450 (2012)
BackgroundIn a previous study of higher-level arthropod phylogeny, analyses of nucleotide sequences from 62 protein-coding nuclear genes for 80 panarthopod species yielded significantly higher bootstrap support for selected nodes than did amino acids
Externí odkaz:
https://doaj.org/article/c4a60d9d6c2d48219b74b817729770e3
Autor:
Rutger A. Vos, Albert J. Vilella, Tobias Thierer, Arlin Stoltzfus, Jason E. Stajich, Wei-Gang Qiu, Art F.Y. Poon, Sergei L. Kosakovsky Pond, William H. Piel, Brian I. Osborne, Aaron J. Mackey, Paul O. Lewis, Toshiaki Katayama, Alisha Holloway, Richard Holland, Mark Holder, Naohisa Goto, Amy Bouck, James P. Balhoff, Hilmar Lapp, Sendu Bala, Christian M. Zmasek, Derrick J. Zwickl, Todd J. Vision
Publikováno v:
Evolutionary Bioinformatics, Vol 3, Pp 287-296 (2007)
In December, 2006, a group of 26 software developers from some of the most widely used life science programming toolkits and phylogenetic software projects converged on Durham, North Carolina, for a Phyloinformatics Hackathon, an intense five-day col
Externí odkaz:
https://doaj.org/article/d0d2017341124c68b9a42ae007f1bba6
Publikováno v:
BMC Evolutionary Biology, Vol 18, Iss 1, Pp 1-16 (2018)
BMC Evolutionary Biology
BMC Evolutionary Biology
Background The pattern of data availability in a phylogenetic data set may lead to the formation of terraces, collections of equally optimal trees. Terraces can arise in tree space if trees are scored with parsimony or with partitioned, edge-unlinked
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::47aecacdc5691ec721b058bb5118eee0
http://link.springer.com/article/10.1186/s12862-018-1162-9
http://link.springer.com/article/10.1186/s12862-018-1162-9
Autor:
Ann Danowitz, Shu-Min Kao, Manyuan Long, Thomas Wicker, Andrea R. Gschwend, Chengjun Zhang, Jayson Talag, Dave Flowers, Railson Schreinert dos Santos, Derrick J. Zwickl, Bin Han, Jetty S.S. Ammiraju, Seunghee Lee, Claude Becker, Muhua Wang, Scott A. Jackson, Qi Feng, Ramil Mauleon, Kshirod K. Jena, Luis F. Rivera, Moaine El Baidouri, Jeremy Schmutz, Eric Lasserre, Kevin G. Nyberg, Jhih wun Zeng, Robert J Henry, Jose Luis Goicoechea, Carlos A. Machado, Daniel da Rosa Farias, Michael J. Sanderson, Kapeel Chougule, Jianwei Zhang, Nori Kurata, Yi Liao, Julie Jacquemin, Yeisoo Yu, Christos Noutsos, Chuanzhu Fan, Joshua C. Stein, Richard Cooke, Rod A. Wing, Marie-Christine Carpentier, Aiko Iwata, Dongying Gao, Carlos E.M. Londono, Nickolai Alexandrov, Olivier Panaud, Kenneth L. McNally, Xiang Song, Li Zhang, Cheng chieh Wu, Antonio Costa de Oliveira, Dario Copetti, Andrea Zuccolo, Fu Jin Wei, Mingsheng Chen, Sharon Wei, Dave Kudrna, Yue-Ie C. Hsing, Doreen Ware, Jun Wang, Detlef Weigel, Paul L. Sanchez, Luciano Carlos da Maia, Qiang Zhao
Publikováno v:
Nature genetics. 50(11)
This article was not made open access when initially published online, which was corrected before print publication. In addition, ORCID links were missing for 12 authors and have been added to the HTML and PDF versions of the article.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9b228af053a96e030257e307f06604d0
https://pubmed.ncbi.nlm.nih.gov/29358651
https://pubmed.ncbi.nlm.nih.gov/29358651
Autor:
Seunghee Lee, Jetty S.S. Ammiraju, Railson Schreinert dos Santos, Ann Danowitz, Shu-Min Kao, Li Zhang, Chengjun Zhang, Cheng chieh Wu, Dongying Gao, Carlos E.M. Londono, Scott A. Jackson, Yi Liao, Mingsheng Chen, Chuanzhu Fan, Andrea Zuccolo, Muhua Wang, Christos Noutsos, Rod A. Wing, Manyuan Long, Robert J Henry, Marie-Christine Carpentier, Kshirod K. Jena, Aiko Iwata, Yue-Ie C. Hsing, Jose Luis Goicoechea, Bin Han, Richard Cooke, Joshua C. Stein, Luis F. Rivera, Thomas Wicker, Dario Copetti, Fu Jin Wei, Claude Becker, Paul L. Sanchez, Qi Feng, Andrea R. Gschwend, Ramil Mauleon, Carlos A. Machado, Derrick J. Zwickl, Daniel da Rosa Farias, Jayson Talag, Dave Flowers, Eric Lasserre, Nickolai Alexandrov, Yeisoo Yu, Moaine El Baidouri, Luciano Carlos da Maia, Jeremy Schmutz, Dave Kudrna, Olivier Panaud, Kenneth L. McNally, Xiang Song, Kevin G. Nyberg, Nori Kurata, Qiang Zhao, Kapeel Chougule, Jhih wun Zeng, Antonio Costa de Oliveira, Jianwei Zhang, Doreen Ware, Jun Wang, Detlef Weigel, Sharon Wei, Julie Jacquemin, Michael J. Sanderson
Publikováno v:
Nature genetics, vol 50, iss 2
Nature Genetics
Nature Genetics, Nature Publishing Group, 2018, 50 (2), pp.285-296. ⟨10.1038/s41588-018-0040-0⟩
Nature Genetics
Nature Genetics, Nature Publishing Group, 2018, 50 (2), pp.285-296. ⟨10.1038/s41588-018-0040-0⟩
The genus Oryza is a model system for the study of molecular evolution over time scales ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the Oryza species tree, we show that despite few large-scale chromosomal rear
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4e092dbb9a19537bbd53d281805c116a
https://escholarship.org/uc/item/69s9j770
https://escholarship.org/uc/item/69s9j770
Autor:
Tae-Jin Yang, Rod A. Wing, Luis E. Eguiarte, Junki Lee, Kelly P. Steele, Michelle M. McMahon, Derrick J. Zwickl, Alberto Búrquez, Joseph L.M. Charboneau, Hyun Oh Lee, Sudhir Kumar, Enriquena Bustamante, Martin F. Wojciechowski, Dario Copetti, Michael J. Sanderson
Publikováno v:
American Journal of Botany. 102:1115-1127
PREMISE OF THE STUDY: Land-plant plastid genomes have only rarely undergone signifi cant changes in gene content and order. Thus, discovery of additional examples adds power to tests for causes of such genome-scale structural changes. METHODS: Using
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c0ab17a6e58cecf9df686c89fe118ab9
https://doi.org/10.3732/ajb.1500184
https://doi.org/10.3732/ajb.1500184
Publikováno v:
Systematic Biology
We introduce molecularevolution.org, a publicly available gateway for high-throughput, maximum-likelihood phylogenetic analysis powered by grid computing. The gateway features a garli 2.0 web service that enables a user to quickly and easily submit t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a582ec752490dc808a48b5514d6297db
https://doi.org/10.1093/sysbio/syu031
https://doi.org/10.1093/sysbio/syu031
Publikováno v:
Systematic Biology. 63:645-659
We describe new methods for characterizing gene tree discordance in phylogenomic data sets, which screen for deviations from neutral expectations, summarize variation in statistical support among gene trees, and allow comparison of the patterns of di
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e2b308979a0fcff0961356116becaac5
https://doi.org/10.1093/sysbio/syu027
https://doi.org/10.1093/sysbio/syu027