Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Derek Juba"'
Autor:
Carl G. Simon, Subhadip Bodhak, Desu Chen, Stephen J. Florczyk, P. Scott Pine, Mylene Simon, Mary Brady, Antonio Cardone, Peter Bajcsy, Sumona Sarkar, Paula J. Baker, Derek Juba
Publikováno v:
ACS biomaterials scienceengineering. 3(10)
Many biomaterial scaffolds have been advanced to provide synthetic cell niches for tissue engineering and drug screening applications; however, current methods for comparing scaffold niches focus on cell functional outcomes or attempt to normalize ma
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::39934856af58c1b6ced37c282faac606
https://pubmed.ncbi.nlm.nih.gov/33445289
https://pubmed.ncbi.nlm.nih.gov/33445289
Publikováno v:
ICCS
This paper describes our on-going work to accelerate ZENO, a software tool based on Monte Carlo methods (MCMs), used for computing material properties at nanoscale. ZENO employs three main algorithms: (1) Walk on Spheres (WoS), (2) interior sampling,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::647e27950e86b0db1f52eb5a23620730
https://doi.org/10.1016/j.procs.2016.05.319
https://doi.org/10.1016/j.procs.2016.05.319
Autor:
Peter Bajcsy, Mylene Simon, Derek Juba, Jack F. Douglas, Walid Keyrouz, Carl G. Simon, Christopher Lee, Beatriz A. Pazmiño Betancourt, Stephen J. Florczyk
In living systems, it is frequently stated that form follows function by virtue of evolutionary pressures on organism development, but in the study of how functions emerge at the cellular level, function often follows form. We study this chicken vers
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::755e5b5bb34d713ea37646addc036383
https://europepmc.org/articles/PMC5815922/
https://europepmc.org/articles/PMC5815922/
Publikováno v:
J Res Natl Inst Stand Technol
The ZENO software tool computes material, solution,and suspension properties for a specified particle shape or molecular structure using path-integral and Monte Carlo methods. These properties include: capacitance, electric polarizability tensor, int
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45bf8e80c0d601cae8ae351075c5c08c
https://doi.org/10.6028/jres.122.020
https://doi.org/10.6028/jres.122.020
Autor:
Mylene Simon, Peter Bajcsy, Antonio Cardone, Desu Chen, Mary Brady, Paula J. Baker, Carl G. Simon, Sumona Sarkar, Derek Juba, Subhadip Bodhak, P. Scott Pine, Stephen J. Florczyk
Publikováno v:
2016 32nd Southern Biomedical Engineering Conference (SBEC).
There is currently no method for assessing the nature of the cell niche provided by 3D biomaterial scaffolds. Analyzing human bone marrow stromal cell (hBMSC) 3D cell shape in response to different biomaterial scaffolds allowed the 3D cell niche prom
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::28704a36d1a1f46d94f2c24b55dae21a
https://doi.org/10.1109/sbec.2016.58
https://doi.org/10.1109/sbec.2016.58
Autor:
Amitabh Varshney, Derek Juba
Publikováno v:
Journal of Molecular Graphics and Modelling. 27:82-87
Biochemists often wish to compute surface areas of proteins. A variety of algorithms have been developed for this task, but they are designed for traditional single-processor architectures. The current trend in computer hardware is towards increasing
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53c3ac72a41e15701e84d6138ee84f9a
https://doi.org/10.1016/j.jmgm.2008.03.001
https://doi.org/10.1016/j.jmgm.2008.03.001
Publikováno v:
IEEE Transactions on Plasma Science. 36:1112-1113
Data from gyrokinetic turbulence codes are often difficult to visualize due their high dimensionality, the nontrivial geometry of the underlying grids, and the vast range of spatial scales. We present an interactive visualization framework that attem
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::81936c3ba074f3fcf8339efb7261a41c
https://doi.org/10.1109/tps.2008.924509
https://doi.org/10.1109/tps.2008.924509
Autor:
Carl G. Simon, Girish Kumar, Mary Brady, Amitabh Varshney, Derek Juba, Cheuk Yiu Ip, Christopher K. Tison, Antonio Cardone
Publikováno v:
Computational Science & Discovery. 6:015007
There is a need for tools to classify cells based on their three-dimensional (3D) shape. Cells exist in vivo in 3D, cells are frequently cultured within 3D scaffolds in vitro and 3D scaffolds are used for cell delivery in tissue engineering therapies
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0018f72ca7615fbfe02ef14a1504798e
https://doi.org/10.1088/1749-4699/6/1/015007
https://doi.org/10.1088/1749-4699/6/1/015007
Autor:
Peter Bajcsy, Michael Halter, Carl G. Simon, Mary Brady, Antonio Cardone, Mylene Simon, Joe Chalfoun, Adele P. Peskin, Antoine Vandecreme, Marcin Kociolek, Michael Majurski, Derek Juba
Publikováno v:
BMC Bioinformatics
The goal of this survey paper is to overview cellular measurements using optical microscopy imaging followed by automated image segmentation. The cellular measurements of primary interest are taken from mammalian cells and their components. They are
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fc48e9bdf234ce685301e1800f81848e
Publikováno v:
ResearcherID
Direct numerical simulation (DNS) of turbulence is computationally intensive and typically relies on some form of parallel processing. The authors present techniques to map DNS computations to modern graphics processing units (GPUs), which are charac
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e91689a23084d9ab96be4b7a76e235d6
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000263526600009&KeyUID=WOS:000263526600009
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000263526600009&KeyUID=WOS:000263526600009