Zobrazeno 1 - 10
of 229
pro vyhledávání: '"Deorowicz, Sebastian"'
Autor:
Długosz, Maciej1 (AUTHOR), Deorowicz, Sebastian1 (AUTHOR) sebastian.deorowicz@polsl.pl
Publikováno v:
Scientific Reports. 1/26/2024, Vol. 14 Issue 1, p1-11. 11p.
Publikováno v:
In Current Opinion in Structural Biology June 2023 80
We introduce an improved version of RECKONER, an error corrector for Illumina whole genome sequencing data. By modifying its workflow we reduce the computation time even 10 times. We also propose a new method of determination of $k$-mer length, the k
Externí odkaz:
http://arxiv.org/abs/1703.00690
In this paper we introduce RADULS2, the fastest parallel sorter based on radix algorithm. It is optimized to process huge amounts of data making use of modern multicore CPUs. The main novelties include: extremely optimized algorithm for handling tiny
Externí odkaz:
http://arxiv.org/abs/1703.00687
Summary: Counting all k-mers in a given dataset is a standard procedure in many bioinformatics applications. We introduce KMC3, a significant improvement of the former KMC2 algorithm together with KMC tools for manipulating k-mer databases. Usefulnes
Externí odkaz:
http://arxiv.org/abs/1701.08022
Autor:
Deorowicz, Sebastian, Gudyś, Adam
Publikováno v:
Bioinformatics; Jul2024, Vol. 40 Issue 7, p1-8, 8p
The paper introduces RADULS, a new parallel sorter based on radix sort algorithm, intended to organize ultra-large data sets efficiently. For example 4G 16-byte records can be sorted with 16 threads in less than 15 seconds on Intel Xeon-based worksta
Externí odkaz:
http://arxiv.org/abs/1612.02557
Autor:
Dlugosz, Maciej, Deorowicz, Sebastian
Motivation: Next-generation sequencing tools have enabled producing of huge amount of genomic information at low cost. Unfortunately, presence of sequencing errors in such data affects quality of downstream analyzes. Accuracy of them can be improved
Externí odkaz:
http://arxiv.org/abs/1602.03086
Autor:
Gudys, Adam, Deorowicz, Sebastian
Increasing size of sequence databases caused by the development of high throughput sequencing, poses multiple alignment algorithms to face one of the greatest challenges yet. As we show, well-established techniques employed for increasing alignment q
Externí odkaz:
http://arxiv.org/abs/1512.07437
The FM-index is a celebrated compressed data structure for full-text pattern searching. After the first wave of interest in its theoretical developments, we can observe a surge of interest in practical FM-index variants in the last few years. These e
Externí odkaz:
http://arxiv.org/abs/1506.04896