Benchmarking Transcriptomics Foundation Models for Perturbation Analysis : one PCA still rules them all

Autor: Bendidi, Ihab, Whitfield, Shawn, Kenyon-Dean, Kian, Yedder, Hanene Ben, Mesbahi, Yassir El, Noutahi, Emmanuel, Denton, Alisandra K.

Understanding the relationships among genes, compounds, and their interactions in living organisms remains limited due to technological constraints and the complexity of biological data. Deep learning has shown promise in exploring these relationship

Externí odkaz: http://arxiv.org/abs/2410.13956

Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data

Autor: Denton, Alisandra K., Maß, Janina, Külahoglu, Canan, Lercher, Martin J., Bräutigam, Andrea, Weber, Andreas P. M.

Publikováno v: Journal of Experimental Botany, 2017 Jan 01. 68(2), 147-160.

Externí odkaz: https://www.jstor.org/stable/26391467

Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C₄ Model and Provides Candidates for Regulation

Autor: Pick, Thea R., Bräutigam, Andrea, Schlüter, Urte, Denton, Alisandra K., Colmsee, Christian, Scholz, Uwe, Fahnenstich, Holger, Pieruschka, Roland, Rascher, Uwe, Sonnewald, Uwe, Weber, Andreas P.M.

Publikováno v: The Plant Cell, 2011 Dec 01. 23(12), 4208-4220.

Externí odkaz: https://www.jstor.org/stable/41433917

Phosphate starvation causes different stress responses in the lipid metabolism of tomato leaves and roots

Autor: Pfaff, Julia, Denton, Alisandra K., Usadel, Björn, Pfaff, Christian

Publikováno v: Biochimica et biophysica acta : BBA / Molecular and cell biology of lipids Molecular and cell biology of lipids 1865(9), 158763 (2020). doi:10.1016/j.bbalip.2020.158763
Biochimica et biophysica acta / Molecular and cell biology of lipids Molecular and cell biology of lipids 1865(9), 158763-(2020). doi:10.1016/j.bbalip.2020.158763

Biochimica et biophysica acta : BBA / Molecular and cell biology of lipids Molecular and cell biology of lipids 1865(9), 158763 (2020). doi:10.1016/j.bbalip.2020.158763
Published by Elsevier, Amsterdam

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d32a1fd93c716795d294c9d9070cabb4
https://pubmed.ncbi.nlm.nih.gov/32645408

Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris

Autor: Vogel, Alexander, Schwacke, Rainer, Denton, Alisandra K., Usadel, Björn, Hollmann, Julien, Fischer, Karsten, Bolger, Anthony, Schmidt, Maximilian H.-W., Bolger, Marie E., Gundlach, Heidrun, Mayer, Klaus F. X., Weiss-Schneeweiss, Hanna, Temsch, Eva M., Krause, Kirsten

Publikováno v: Nat. Commun. 9:2515 (2018)
Nature Communications, Vol 9, Iss 1, Pp 1-11 (2018)
Nature Communications
Nature Communications 9(1), 2515 (2018). doi:10.1038/s41467-018-04344-z
Nature Communications 9, 2515 (2018). doi:10.1038/s41467-018-04344-z

A parasitic lifestyle, where plants procure some or all of their nutrients from other living plants, has evolved independently in many dicotyledonous plant families and is a major threat for agriculture globally. Nevertheless, no genome sequence of a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::143f7671a46c06732d5056f41d6176e3