Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Denisa Maderankova"'
Autor:
Denisa Maděránková, Lenka Mikalová, Michal Strouhal, Šimon Vadják, Ivana Kuklová, Petra Pospíšilová, Lenka Krbková, Pavlína Koščová, Ivo Provazník, David Šmajs
Publikováno v:
PLoS Neglected Tropical Diseases, Vol 13, Iss 6, p e0007463 (2019)
BackgroundPathogenic treponemes related to Treponema pallidum are both human (causing syphilis, yaws, bejel) and animal pathogens (infections of primates, venereal spirochetosis in rabbits). A set of 11 treponemal genome sequences including those of
Externí odkaz:
https://doaj.org/article/2b648f1ed7a94d04acc68916ef08ece0
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 17, Iss , Pp 118-126 (2019)
Species delineation based on bacterial genomes is an essential part of the research of prokaryotes. In silico genome-to-genome comparison methods are computationally demanding, but much less tedious and error prone than the wet-lab methods. In this p
Externí odkaz:
https://doaj.org/article/0276337377d940a29b49871a19a11237
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 17, Iss , Pp 406-414 (2019)
Bioinformatics may seem to be a scientific field processing primarily large string datasets, as nucleotides and amino acids are represented with dedicated characters. On the other hand, many computational tasks that bioinformatics challenges are math
Externí odkaz:
https://doaj.org/article/bc3bdeae49e9435083bf54efeb2fd278
Publikováno v:
Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Vol 17, Iss, Pp 406-414 (2019)
Computational and Structural Biotechnology Journal, Vol 17, Iss, Pp 406-414 (2019)
Bioinformatics may seem to be a scientific field processing primarily large string datasets, as nucleotides and amino acids are represented with dedicated characters. On the other hand, many computational tasks that bioinformatics challenges are math
Autor:
Marketa Nykrynova, Helena Skutkova, Matej Bezdicek, Vojtech Barton, Martina Lengerová, Denisa Maderankova
Publikováno v:
Bioinformatics and Biomedical Engineering ISBN: 9783030179342
IWBBIO (2)
IWBBIO (2)
Genotyping is necessary for the discrimination of bacteria strains. However, methods such as multilocus sequence typing (MLST) or minim typing (mini-MLST) use a combination of several genes. In this paper, we present an augmented method for typing Kl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3c9ce9f92b5af53988314fc97c7c3ee7
https://doi.org/10.1007/978-3-030-17935-9_17
https://doi.org/10.1007/978-3-030-17935-9_17
Publikováno v:
Bioinformatics and Biomedical Engineering ISBN: 9783030179373
IWBBIO (1)
IWBBIO (1)
Copy number variation (CNV) plays important role in drug resistance in bacterial genomes. It is one of the prevalent forms of structural variations which leads to duplications or deletions of regions with varying size across the genome. So far, most
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c91f0b3e407afc1f382f00853a0f809a
https://doi.org/10.1007/978-3-030-17938-0_9
https://doi.org/10.1007/978-3-030-17938-0_9
Publikováno v:
Advances in Intelligent Systems and Computing ISBN: 9783319912103
ITIB
ITIB
Nowadays we use multiple molecular typing methods capable of distinguishing bacteria strains. However, a majority of these methods are time-consuming, and associated costs are not negligible. Also, reproducibility of typing results is questionable. T
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c19a17258452114a3f8d84896c6402af
https://doi.org/10.1007/978-3-319-91211-0_37
https://doi.org/10.1007/978-3-319-91211-0_37
Publikováno v:
CIBCB
The origin of replication (oriC) plays an important role in the cell cycle as the place where DNA replication is initiated. In bacterial cells, a single replication origin can be found and its correct identification is necessary in the annotation pro
Publikováno v:
Advances in Intelligent Systems and Computing ISBN: 9783319065922
Since experimental techniques of protein hotspot prediction are still financially extremely demanding and time consuming there is a strain to produce sufficiently reliable computational techniques for this particular task. We propose an algorithm bas
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e8e7ebd9b1f6e93751bc84cd688f03e8
https://doi.org/10.1007/978-3-319-06593-9_29
https://doi.org/10.1007/978-3-319-06593-9_29
Autor:
Denisa Maderankova, Ivo Provaznik
Publikováno v:
ISABEL
Estimated number of species is 7--100 million of prokaryotes and eukaryotes. Just a small fraction has been identified up to the present days. Morphological taxonomy is not able to process such huge diversity. Methods based on analysis of DNA sequenc